SMTL ID : 6xjs.1

Crystal Structure of KPT-330 bound to CRM1 (E582K, 537-DLTVK-541 to GLCEQ)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 26 residues within 4Å: Chain A: D.18, G.19, G.20, T.21, G.22, K.23, T.24, T.25, F.35, E.36, K.37, K.38, Y.39, A.41, T.42, A.67, G.68, Q.69, N.122, K.123, D.125, I.126, S.150, A.151, K.152 Ligands: MG.2 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:G.20, A:T.21, A:T.21, A:G.22, A:K.23, A:K.23, A:T.24, A:T.25, A:T.25, A:E.36, A:Y.39, A:Y.39, A:T.42, A:G.68, A:Q.69, A:N.122, A:K.123, A:K.123, A:S.150, A:A.151, A:K.152 Water bridges: A:K.37, A:V.40 Salt bridges: A:D.125 pi-Stacking: A:F.35, A:F.35

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: K.23, T.24, T.42 Ligands: GNP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.24, A:T.42

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 11 residues within 4Å: Chain C: Y.229, Y.233, V.262, S.263, N.264, L.265, K.266, I.267, T.278, F.281, N.329 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:V.262, C:L.265 GOL.4: 6 residues within 4Å: Chain C: L.544, F.547, H.551, D.594, K.597, T.598 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.551

1 x V6A: selinexor, bound form(Covalent)

V6A.5: 14 residues within 4Å: Chain C: I.498, L.502, C.505, K.514, A.518, I.521, M.522, V.525, F.538, T.541, V.542, K.545, L.546, F.549 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:L.502, C:C.505, C:I.521, C:K.545, C:F.549 Hydrogen bonds: C:K.545 pi-Cation interactions: C:K.514, C:K.545 Halogen bonds: C:V.542

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walker, J.S. et al., Recurrent XPO1 mutations alter pathogenesis of chronic lymphocytic leukemia. J Hematol Oncol (2021)

Release Date

2021-01-27

Peptides

GTP-binding nuclear protein Ran: A
Ran-specific GTPase-activating protein 1: B
Exportin-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

GTP-binding nuclear protein Ran

Ran-specific GTPase-activating protein 1

Exportin-1

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