SMTL ID : 6y6x.1

Tetracenomycin X bound to the human ribosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

229 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: C.14, A.15 No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Chain A: G.1654, U.3915 No protein-ligand interaction detected (PLIP) MG.3: 3 residues within 4Å: Chain A: A.38, G.40, C.41 No protein-ligand interaction detected (PLIP) MG.4: 4 residues within 4Å: Chain A: G.40, C.41, G.3916, U.4189 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain A: G.48, U.96, G.292 No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Chain A: A.51 No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Chain A: A.56 No protein-ligand interaction detected (PLIP) MG.8: 1 residues within 4Å: Chain A: A.61 No protein-ligand interaction detected (PLIP) MG.9: 2 residues within 4Å: Chain A: A.62, U.333 No protein-ligand interaction detected (PLIP) MG.10: 4 residues within 4Å: Chain A: C.83, G.85, G.1383, C.1384 No protein-ligand interaction detected (PLIP) MG.11: 3 residues within 4Å: Chain A: C.112, G.154, G.156 No protein-ligand interaction detected (PLIP) MG.12: 3 residues within 4Å: Chain A: A.198, G.240, G.241 No protein-ligand interaction detected (PLIP) MG.13: 4 residues within 4Å: Chain A: C.210, U.231, G.234, A.235 No protein-ligand interaction detected (PLIP) MG.14: 2 residues within 4Å: Chain A: G.229, A.235 No protein-ligand interaction detected (PLIP) MG.15: 3 residues within 4Å: Chain A: G.356, C.358 Chain F: G.99 No protein-ligand interaction detected (PLIP) MG.16: 2 residues within 4Å: Chain A: G.356, A.359 No protein-ligand interaction detected (PLIP) MG.17: 3 residues within 4Å: Chain A: C.358, A.359, A.377 No protein-ligand interaction detected (PLIP) MG.18: 2 residues within 4Å: Chain A: G.369, G.2793 No protein-ligand interaction detected (PLIP) MG.19: 4 residues within 4Å: Chain A: A.410, G.415, U.416, G.2331 No protein-ligand interaction detected (PLIP) MG.20: 4 residues within 4Å: Chain A: C.414, G.415, U.416, G.417 No protein-ligand interaction detected (PLIP) MG.21: 5 residues within 4Å: Chain A: G.423, U.424 Chain C: A.9, G.10, C.11 No protein-ligand interaction detected (PLIP) MG.22: 2 residues within 4Å: Chain A: A.4533, G.4534 No protein-ligand interaction detected (PLIP) MG.23: 4 residues within 4Å: Chain A: G.1633, G.1641, G.4534, A.4535 No protein-ligand interaction detected (PLIP) MG.24: 3 residues within 4Å: Chain A: A.1632, G.1633, A.4535 No protein-ligand interaction detected (PLIP) MG.25: 2 residues within 4Å: Chain A: U.1659, G.2348 No protein-ligand interaction detected (PLIP) MG.26: 3 residues within 4Å: Chain A: A.1518, C.1520, C.1521 No protein-ligand interaction detected (PLIP) MG.27: 3 residues within 4Å: Chain A: G.1522, A.1523, G.1651 No protein-ligand interaction detected (PLIP) MG.28: 3 residues within 4Å: Chain A: A.3906, G.3907, G.4448 No protein-ligand interaction detected (PLIP) MG.29: 4 residues within 4Å: Chain A: A.1326, C.1327, A.4449, U.4450 No protein-ligand interaction detected (PLIP) MG.30: 4 residues within 4Å: Chain A: A.3901, A.3902, U.4450, G.4451 No protein-ligand interaction detected (PLIP) MG.31: 5 residues within 4Å: Chain A: G.3898, G.3899, U.4521, G.4522, A.4523 No protein-ligand interaction detected (PLIP) MG.32: 3 residues within 4Å: Chain A: C.4519, G.4520, U.4521 No protein-ligand interaction detected (PLIP) MG.33: 3 residues within 4Å: Chain A: A.3903, G.3904, G.4451 No protein-ligand interaction detected (PLIP) MG.34: 3 residues within 4Å: Chain A: G.4451, G.4522, U.4557 No protein-ligand interaction detected (PLIP) MG.35: 3 residues within 4Å: Chain A: C.1325, A.3877, G.3879 No protein-ligand interaction detected (PLIP) MG.36: 5 residues within 4Å: Chain 6: D.41 Chain A: U.1317, A.1322, A.1323, A.1324 1 PLIP interactions: 1 interactions with chain 6 Metal complexes: 6:D.41 MG.37: 6 residues within 4Å: Chain 6: I.40, D.41 Chain A: U.1319, A.1322, G.1880, C.1881 No protein-ligand interaction detected (PLIP) MG.38: 3 residues within 4Å: Chain A: U.1320, G.1670, G.1880 No protein-ligand interaction detected (PLIP) MG.39: 3 residues within 4Å: Chain A: G.1680, G.1853, A.4394 No protein-ligand interaction detected (PLIP) MG.40: 2 residues within 4Å: Chain A: G.1854, G.1855 No protein-ligand interaction detected (PLIP) MG.41: 2 residues within 4Å: Chain A: G.3907, A.3908 No protein-ligand interaction detected (PLIP) MG.42: 2 residues within 4Å: Chain A: C.1318, U.1656 No protein-ligand interaction detected (PLIP) MG.43: 3 residues within 4Å: Chain A: G.1321, A.4394, U.4445 No protein-ligand interaction detected (PLIP) MG.44: 5 residues within 4Å: Chain A: G.4393, A.4394, C.4443, C.4444, U.4445 No protein-ligand interaction detected (PLIP) MG.45: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.46: 3 residues within 4Å: Chain A: G.1667, A.2279, G.2280 No protein-ligand interaction detected (PLIP) MG.47: 3 residues within 4Å: Chain A: C.1665, A.2279, G.2280 No protein-ligand interaction detected (PLIP) MG.48: 2 residues within 4Å: Chain A: A.2282, G.2283 No protein-ligand interaction detected (PLIP) MG.49: 5 residues within 4Å: Chain 2: G.17 Chain A: A.1850, G.1851, G.2283, G.2284 1 PLIP interactions: 1 interactions with chain 2 Metal complexes: 2:G.17 MG.50: 3 residues within 4Å: Chain A: U.35, G.4187, U.4188 No protein-ligand interaction detected (PLIP) MG.51: 2 residues within 4Å: Chain A: G.4183, G.4187 No protein-ligand interaction detected (PLIP) MG.52: 5 residues within 4Å: Chain A: U.43, A.44, U.45 Chain P: K.82, V.84 No protein-ligand interaction detected (PLIP) MG.53: 2 residues within 4Å: Chain A: U.1381, G.1382 No protein-ligand interaction detected (PLIP) MG.54: 4 residues within 4Å: Chain A: G.315, U.316, U.4353, U.4354 No protein-ligand interaction detected (PLIP) MG.55: 3 residues within 4Å: Chain A: G.1335, G.1336, C.2346 No protein-ligand interaction detected (PLIP) MG.56: 4 residues within 4Å: Chain A: C.358, A.359, A.363, G.364 No protein-ligand interaction detected (PLIP) MG.57: 3 residues within 4Å: Chain A: A.410, G.2330, G.2331 No protein-ligand interaction detected (PLIP) MG.58: 2 residues within 4Å: Chain A: C.719, U.1905 No protein-ligand interaction detected (PLIP) MG.59: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.60: 1 residues within 4Å: Chain A: G.1904 No protein-ligand interaction detected (PLIP) MG.61: 1 residues within 4Å: Chain A: G.1886 No protein-ligand interaction detected (PLIP) MG.62: 1 residues within 4Å: Chain A: C.1915 No protein-ligand interaction detected (PLIP) MG.63: 5 residues within 4Å: Chain A: G.1887, A.1888, U.1889, G.1890, C.1938 No protein-ligand interaction detected (PLIP) MG.64: 5 residues within 4Å: Chain A: C.1914, C.1915, G.1916, A.1917 Chain Q: K.23 No protein-ligand interaction detected (PLIP) MG.65: 1 residues within 4Å: Chain A: G.1895 No protein-ligand interaction detected (PLIP) MG.66: 3 residues within 4Å: Chain A: G.1512, C.1848, U.1849 No protein-ligand interaction detected (PLIP) MG.67: 6 residues within 4Å: Chain A: U.1578, C.1579, C.1610, C.1611, G.1612 Ligands: MG.69 No protein-ligand interaction detected (PLIP) MG.68: 3 residues within 4Å: Chain A: C.1580, U.1609, C.1610 No protein-ligand interaction detected (PLIP) MG.69: 6 residues within 4Å: Chain A: U.1578, U.1609, C.1610, U.3637, G.3638 Ligands: MG.67 No protein-ligand interaction detected (PLIP) MG.70: 4 residues within 4Å: Chain A: A.3647, G.3827, A.3828, G.3829 No protein-ligand interaction detected (PLIP) MG.71: 6 residues within 4Å: Chain A: U.1588, C.1589, U.3645, A.3646, A.4553, G.4554 No protein-ligand interaction detected (PLIP) MG.72: 3 residues within 4Å: Chain A: G.3634, C.3636, A.3648 No protein-ligand interaction detected (PLIP) MG.73: 3 residues within 4Å: Chain A: U.1588, U.3645, A.3646 No protein-ligand interaction detected (PLIP) MG.74: 3 residues within 4Å: Chain A: A.3642, U.3644, U.3645 No protein-ligand interaction detected (PLIP) MG.75: 1 residues within 4Å: Chain A: G.4543 No protein-ligand interaction detected (PLIP) MG.76: 2 residues within 4Å: Chain A: A.3692, U.3693 No protein-ligand interaction detected (PLIP) MG.77: 5 residues within 4Å: Chain A: A.3651, A.3652, G.3691 Chain D: R.197, R.199 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:R.197 MG.78: 2 residues within 4Å: Chain A: G.2318, G.2320 No protein-ligand interaction detected (PLIP) MG.79: 4 residues within 4Å: Chain A: C.1675, C.4375, A.4376, G.4377 No protein-ligand interaction detected (PLIP) MG.80: 2 residues within 4Å: Chain A: C.1678, G.3913 No protein-ligand interaction detected (PLIP) MG.81: 3 residues within 4Å: Chain A: A.4214, C.4215, G.4217 No protein-ligand interaction detected (PLIP) MG.82: 3 residues within 4Å: Chain A: A.4213, C.4215, G.4216 No protein-ligand interaction detected (PLIP) MG.83: 1 residues within 4Å: Chain A: U.1735 No protein-ligand interaction detected (PLIP) MG.84: 2 residues within 4Å: Chain A: C.2392, U.2819 No protein-ligand interaction detected (PLIP) MG.85: 4 residues within 4Å: Chain A: C.2393, G.2394, C.2818, U.2819 No protein-ligand interaction detected (PLIP) MG.86: 3 residues within 4Å: Chain A: C.2393, C.2817, C.2818 No protein-ligand interaction detected (PLIP) MG.87: 2 residues within 4Å: Chain A: G.4392, G.4448 No protein-ligand interaction detected (PLIP) MG.88: 2 residues within 4Å: Chain A: G.1329, A.3865 No protein-ligand interaction detected (PLIP) MG.89: 4 residues within 4Å: Chain A: G.1335, C.2346, A.2347, G.2348 No protein-ligand interaction detected (PLIP) MG.90: 3 residues within 4Å: Chain A: A.1337, G.2343, U.2344 No protein-ligand interaction detected (PLIP) MG.91: 5 residues within 4Å: Chain 8: R.9 Chain A: G.2402, A.2529, A.2783, C.2784 No protein-ligand interaction detected (PLIP) MG.92: 3 residues within 4Å: Chain A: G.2528, A.2529, C.2784 No protein-ligand interaction detected (PLIP) MG.93: 3 residues within 4Å: Chain A: C.2410, C.2411, A.2428 No protein-ligand interaction detected (PLIP) MG.94: 2 residues within 4Å: Chain A: C.2422, A.2423 No protein-ligand interaction detected (PLIP) MG.95: 2 residues within 4Å: Chain A: U.2826, G.2830 No protein-ligand interaction detected (PLIP) MG.96: 1 residues within 4Å: Chain A: A.2370 No protein-ligand interaction detected (PLIP) MG.97: 1 residues within 4Å: Chain A: C.2430 No protein-ligand interaction detected (PLIP) MG.98: 3 residues within 4Å: Chain A: A.2438, U.2782 Chain Z: T.90 No protein-ligand interaction detected (PLIP) MG.99: 3 residues within 4Å: Chain A: C.2791, C.2792 Chain d: K.47 No protein-ligand interaction detected (PLIP) MG.100: 2 residues within 4Å: Chain A: A.1600, C.2794 No protein-ligand interaction detected (PLIP) MG.101: 3 residues within 4Å: Chain A: A.2845, G.2846, G.2847 No protein-ligand interaction detected (PLIP) MG.102: 2 residues within 4Å: Chain A: U.4632, G.4633 No protein-ligand interaction detected (PLIP) MG.103: 3 residues within 4Å: Chain A: A.956, G.957, G.958 No protein-ligand interaction detected (PLIP) MG.104: 2 residues within 4Å: Chain A: G.1426, C.1458 No protein-ligand interaction detected (PLIP) MG.105: 3 residues within 4Å: Chain A: G.1592, U.4526, G.4527 No protein-ligand interaction detected (PLIP) MG.106: 4 residues within 4Å: Chain A: U.1591, G.1592, C.1594, U.4556 No protein-ligand interaction detected (PLIP) MG.107: 1 residues within 4Å: Chain A: A.2857 No protein-ligand interaction detected (PLIP) MG.108: 3 residues within 4Å: Chain A: U.1636, A.1638, U.1639 No protein-ligand interaction detected (PLIP) MG.109: 2 residues within 4Å: Chain A: A.1736, A.1737 No protein-ligand interaction detected (PLIP) MG.110: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.111: 3 residues within 4Å: Chain A: A.4464, C.4486, A.4487 No protein-ligand interaction detected (PLIP) MG.112: 2 residues within 4Å: Chain A: A.2363, G.2364 No protein-ligand interaction detected (PLIP) MG.113: 3 residues within 4Å: Chain A: A.2363, U.3853, A.3894 No protein-ligand interaction detected (PLIP) MG.114: 3 residues within 4Å: Chain 8: S.16 Chain A: G.2514, G.2516 No protein-ligand interaction detected (PLIP) MG.115: 6 residues within 4Å: Chain A: G.2443, C.2445, A.2511, G.2514, G.2515, G.2516 No protein-ligand interaction detected (PLIP) MG.116: 3 residues within 4Å: Chain A: C.2445, C.2446, G.2510 No protein-ligand interaction detected (PLIP) MG.117: 4 residues within 4Å: Chain A: U.2444, C.2445, G.2510 Chain C: U.110 No protein-ligand interaction detected (PLIP) MG.118: 3 residues within 4Å: Chain A: G.4647, A.4648, G.4650 No protein-ligand interaction detected (PLIP) MG.119: 3 residues within 4Å: Chain A: U.2639, G.2693, G.2694 No protein-ligand interaction detected (PLIP) MG.120: 5 residues within 4Å: Chain A: G.2700, U.2701, C.2702, G.2714, G.2715 No protein-ligand interaction detected (PLIP) MG.121: 3 residues within 4Å: Chain A: G.2400, A.2401, A.2787 No protein-ligand interaction detected (PLIP) MG.122: 4 residues within 4Å: Chain A: A.2789, G.2796, G.2827, U.2828 No protein-ligand interaction detected (PLIP) MG.123: 1 residues within 4Å: Chain A: G.2799 No protein-ligand interaction detected (PLIP) MG.124: 2 residues within 4Å: Chain A: A.2845, G.2846 No protein-ligand interaction detected (PLIP) MG.125: 5 residues within 4Å: Chain A: A.2849, A.2850, G.2851, U.2852, G.2855 No protein-ligand interaction detected (PLIP) MG.126: 4 residues within 4Å: Chain A: A.2850, G.2851, U.2852, A.4496 No protein-ligand interaction detected (PLIP) MG.127: 2 residues within 4Å: Chain A: G.2851, U.2852 No protein-ligand interaction detected (PLIP) MG.128: 2 residues within 4Å: Chain A: C.3833, U.4497 No protein-ligand interaction detected (PLIP) MG.129: 4 residues within 4Å: Chain A: A.2879, A.2881, G.3628, A.3629 No protein-ligand interaction detected (PLIP) MG.130: 4 residues within 4Å: Chain A: U.3697, G.3698, A.3747, A.3817 No protein-ligand interaction detected (PLIP) MG.131: 4 residues within 4Å: Chain A: C.3701, U.3704, G.3705, U.3745 No protein-ligand interaction detected (PLIP) MG.132: 6 residues within 4Å: Chain A: C.3701, A.3702, G.3703, U.3704, A.3746, A.3748 No protein-ligand interaction detected (PLIP) MG.133: 3 residues within 4Å: Chain A: A.3736, A.3737, G.3738 No protein-ligand interaction detected (PLIP) MG.134: 3 residues within 4Å: Chain A: U.3778, A.3779, G.3780 No protein-ligand interaction detected (PLIP) MG.135: 3 residues within 4Å: Chain A: C.3782, A.3783, G.3787 No protein-ligand interaction detected (PLIP) MG.136: 1 residues within 4Å: Chain A: A.3783 No protein-ligand interaction detected (PLIP) MG.137: 1 residues within 4Å: Chain A: A.3871 No protein-ligand interaction detected (PLIP) MG.138: 3 residues within 4Å: Chain A: G.3907, G.4393, C.4447 No protein-ligand interaction detected (PLIP) MG.139: 3 residues within 4Å: Chain A: U.3920, G.4184, G.4185 No protein-ligand interaction detected (PLIP) MG.140: 2 residues within 4Å: Chain A: A.3923, C.3924 No protein-ligand interaction detected (PLIP) MG.141: 3 residues within 4Å: Chain A: U.4208, G.4209, U.4210 No protein-ligand interaction detected (PLIP) MG.142: 1 residues within 4Å: Chain A: A.4239 No protein-ligand interaction detected (PLIP) MG.143: 1 residues within 4Å: Chain A: A.4281 No protein-ligand interaction detected (PLIP) MG.144: 1 residues within 4Å: Chain A: G.4329 No protein-ligand interaction detected (PLIP) MG.145: 4 residues within 4Å: Chain A: C.4443, C.4444, U.4445, U.4446 No protein-ligand interaction detected (PLIP) MG.146: 7 residues within 4Å: Chain A: U.4404, G.4405, U.4406, G.4407, G.4408, C.4434, U.4435 No protein-ligand interaction detected (PLIP) MG.147: 1 residues within 4Å: Chain A: G.4408 No protein-ligand interaction detected (PLIP) MG.148: 3 residues within 4Å: Chain A: C.4417, G.4418, C.4421 No protein-ligand interaction detected (PLIP) MG.149: 2 residues within 4Å: Chain A: A.4479 Chain K: N.169 No protein-ligand interaction detected (PLIP) MG.150: 3 residues within 4Å: Chain A: G.4489, C.4490, A.4589 No protein-ligand interaction detected (PLIP) MG.151: 2 residues within 4Å: Chain A: G.4515 Chain E: H.2 No protein-ligand interaction detected (PLIP) MG.152: 3 residues within 4Å: Chain A: G.4527, G.4528, G.4529 No protein-ligand interaction detected (PLIP) MG.153: 1 residues within 4Å: Chain A: C.4561 No protein-ligand interaction detected (PLIP) MG.154: 2 residues within 4Å: Chain A: U.4588, G.4713 No protein-ligand interaction detected (PLIP) MG.155: 6 residues within 4Å: Chain A: G.4637, U.4638, G.4639, G.4660, G.4661, C.4662 No protein-ligand interaction detected (PLIP) MG.156: 4 residues within 4Å: Chain A: U.4627, U.4628, A.4665 Chain E: K.372 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:K.372 MG.157: 3 residues within 4Å: Chain A: U.4682, G.4706, A.4707 No protein-ligand interaction detected (PLIP) MG.158: 2 residues within 4Å: Chain A: A.4705, G.4706 No protein-ligand interaction detected (PLIP) MG.159: 3 residues within 4Å: Chain A: U.4685, G.4686, C.4698 No protein-ligand interaction detected (PLIP) MG.160: 5 residues within 4Å: Chain 2: H.38 Chain A: C.1675, C.1676, G.4377, A.4378 No protein-ligand interaction detected (PLIP) MG.161: 1 residues within 4Å: Chain A: A.3917 No protein-ligand interaction detected (PLIP) MG.162: 3 residues within 4Å: Chain A: G.1211, G.1212, C.1215 No protein-ligand interaction detected (PLIP) MG.163: 3 residues within 4Å: Chain A: C.1077, C.1216, G.1217 No protein-ligand interaction detected (PLIP) MG.164: 1 residues within 4Å: Chain A: G.725 No protein-ligand interaction detected (PLIP) MG.165: 4 residues within 4Å: Chain A: A.1533, A.1534, C.1535, U.1620 No protein-ligand interaction detected (PLIP) MG.166: 4 residues within 4Å: Chain A: U.1339, G.1516, A.1518, C.1519 No protein-ligand interaction detected (PLIP) MG.167: 1 residues within 4Å: Chain A: G.1604 No protein-ligand interaction detected (PLIP) MG.168: 5 residues within 4Å: Chain A: G.1625, G.1626, G.4185 Chain D: G.1, R.2 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:G.1 MG.169: 1 residues within 4Å: Chain A: C.3808 No protein-ligand interaction detected (PLIP) MG.170: 1 residues within 4Å: Chain A: C.1879 No protein-ligand interaction detected (PLIP) MG.171: 2 residues within 4Å: Chain A: A.3784, A.3785 No protein-ligand interaction detected (PLIP) MG.172: 4 residues within 4Å: Chain A: C.1740, U.1744, G.1745, C.1785 No protein-ligand interaction detected (PLIP) MG.173: 3 residues within 4Å: Chain A: C.2365, U.3851, A.3852 No protein-ligand interaction detected (PLIP) MG.174: 1 residues within 4Å: Chain A: G.1681 No protein-ligand interaction detected (PLIP) MG.175: 2 residues within 4Å: Chain A: C.4670, U.4673 No protein-ligand interaction detected (PLIP) MG.176: 2 residues within 4Å: Chain A: A.1871, C.4444 No protein-ligand interaction detected (PLIP) MG.177: 2 residues within 4Å: Chain A: A.2417, A.2418 No protein-ligand interaction detected (PLIP) MG.178: 4 residues within 4Å: Chain A: U.4312, G.4331, C.4332, C.4333 No protein-ligand interaction detected (PLIP) MG.179: 4 residues within 4Å: Chain A: C.3701, A.3702, G.3744, U.3745 No protein-ligand interaction detected (PLIP) MG.180: 2 residues within 4Å: Chain A: A.105, A.106 No protein-ligand interaction detected (PLIP) MG.181: 1 residues within 4Å: Chain A: G.244 No protein-ligand interaction detected (PLIP) MG.182: 6 residues within 4Å: Chain A: G.1355, U.1356, C.1357, G.1382, G.1383, C.1384 No protein-ligand interaction detected (PLIP) MG.183: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.184: 3 residues within 4Å: Chain A: C.1898, G.1899, G.2278 No protein-ligand interaction detected (PLIP) MG.185: 5 residues within 4Å: Chain A: G.2309, C.2310, G.2328, U.2329, G.2330 No protein-ligand interaction detected (PLIP) MG.186: 3 residues within 4Å: Chain A: G.2503, C.2505 Chain Z: R.11 No protein-ligand interaction detected (PLIP) MG.187: 3 residues within 4Å: Chain A: G.4649, G.4650, A.4651 No protein-ligand interaction detected (PLIP) MG.188: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.189: 2 residues within 4Å: Chain A: G.2640, C.2689 No protein-ligand interaction detected (PLIP) MG.190: 2 residues within 4Å: Chain A: A.2676, G.2677 No protein-ligand interaction detected (PLIP) MG.191: 2 residues within 4Å: Chain A: G.2888, G.2889 No protein-ligand interaction detected (PLIP) MG.192: 5 residues within 4Å: Chain A: G.3664, G.3665, C.3666, G.3676, U.3677 No protein-ligand interaction detected (PLIP) MG.193: 2 residues within 4Å: Chain A: G.4998, G.4999 No protein-ligand interaction detected (PLIP) MG.194: 4 residues within 4Å: Chain A: G.1641, A.1642, A.3917, G.3918 No protein-ligand interaction detected (PLIP) MG.195: 4 residues within 4Å: Chain A: G.1624, G.1625, A.1642, A.1643 No protein-ligand interaction detected (PLIP) MG.196: 5 residues within 4Å: Chain A: G.3654, C.3655, G.3689, U.3690, G.3691 No protein-ligand interaction detected (PLIP) MG.197: 3 residues within 4Å: Chain A: A.1330, A.2349, C.2351 No protein-ligand interaction detected (PLIP) MG.198: 1 residues within 4Å: Chain A: G.1374 No protein-ligand interaction detected (PLIP) MG.199: 4 residues within 4Å: Chain A: G.4320, U.4321, G.4322, G.4326 No protein-ligand interaction detected (PLIP) MG.200: 1 residues within 4Å: Chain A: A.4691 No protein-ligand interaction detected (PLIP) MG.201: 1 residues within 4Å: Chain A: C.1857 No protein-ligand interaction detected (PLIP) MG.202: 1 residues within 4Å: Chain A: A.65 No protein-ligand interaction detected (PLIP) MG.203: 3 residues within 4Å: Chain A: G.2698, C.2699, G.2717 No protein-ligand interaction detected (PLIP) MG.204: 2 residues within 4Å: Chain A: U.4343, G.4364 No protein-ligand interaction detected (PLIP) MG.205: 1 residues within 4Å: Chain A: A.3746 No protein-ligand interaction detected (PLIP) MG.206: 5 residues within 4Å: Chain A: A.3635, A.3692, U.3693, U.3822, G.3823 No protein-ligand interaction detected (PLIP) MG.207: 3 residues within 4Å: Chain A: G.1587, U.3641, A.3646 No protein-ligand interaction detected (PLIP) MG.208: 6 residues within 4Å: Chain A: U.1582, A.1583, G.1584, C.1585, G.1608, U.1609 No protein-ligand interaction detected (PLIP) MG.209: 3 residues within 4Å: Chain A: U.1317, C.1318, G.1657 No protein-ligand interaction detected (PLIP) MG.210: 2 residues within 4Å: Chain A: G.4529, U.4530 No protein-ligand interaction detected (PLIP) MG.211: 1 residues within 4Å: Chain C: C.19 No protein-ligand interaction detected (PLIP) MG.212: 2 residues within 4Å: Chain A: C.4387 Ligands: OCW.215 No protein-ligand interaction detected (PLIP) MG.213: 3 residues within 4Å: Chain A: U.3645, A.4533 Ligands: OCW.215 No protein-ligand interaction detected (PLIP) MG.214: 3 residues within 4Å: Chain A: A.1634, C.1635, G.1641 No protein-ligand interaction detected (PLIP) MG.216: 4 residues within 4Å: Chain A: C.1894, G.1895 Chain B: A.83, U.84 No protein-ligand interaction detected (PLIP) MG.217: 2 residues within 4Å: Chain B: G.65, G.66 No protein-ligand interaction detected (PLIP) MG.218: 2 residues within 4Å: Chain B: U.96, G.97 No protein-ligand interaction detected (PLIP) MG.219: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.220: 3 residues within 4Å: Chain A: U.2293 Chain C: C.19, A.20 No protein-ligand interaction detected (PLIP) MG.221: 2 residues within 4Å: Chain C: C.150, G.151 No protein-ligand interaction detected (PLIP) MG.222: 1 residues within 4Å: Chain C: A.65 No protein-ligand interaction detected (PLIP) MG.223: 6 residues within 4Å: Chain A: A.4544 Chain D: F.210, G.211, G.212, H.217, I.218 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:F.210, D:G.212, D:H.217 MG.224: 3 residues within 4Å: Chain A: G.1864 Chain L: K.12, N.13 No protein-ligand interaction detected (PLIP) MG.225: 2 residues within 4Å: Chain A: G.2421 Chain R: Y.129 1 PLIP interactions: 1 interactions with chain R Metal complexes: R:Y.129 MG.226: 6 residues within 4Å: Chain A: U.4210, C.4211, A.4212, G.4222 Chain V: T.1, N.2 1 PLIP interactions: 1 interactions with chain V Metal complexes: V:T.1 MG.227: 2 residues within 4Å: Chain A: U.2852 Chain X: N.41 No protein-ligand interaction detected (PLIP) MG.228: 4 residues within 4Å: Chain 6: S.24, Y.27, V.28, I.30 3 PLIP interactions: 3 interactions with chain 6 Metal complexes: 6:S.24, 6:Y.27, 6:I.30 MG.229: 5 residues within 4Å: Chain 8: G.54, T.69, K.70, H.72 Chain A: G.2584 3 PLIP interactions: 3 interactions with chain 8 Metal complexes: 8:G.54, 8:T.69, 8:H.72 MG.231: 3 residues within 4Å: Chain A: A.1533, A.1534 Chain b: Q.29 No protein-ligand interaction detected (PLIP)

1 x OCW: Tetracenomycin X(Non-functional Binders)

OCW.215: 9 residues within 4Å: Chain A: U.3644, A.3908, C.4386, C.4387, U.4531, U.4532, A.4533 Ligands: MG.212, MG.213 No protein-ligand interaction detected (PLIP)

5 x ZN: ZINC ION(Non-covalent)

ZN.230: 5 residues within 4Å: Chain 8: C.45, V.47, C.82, K.84, C.85 No protein-ligand interaction detected (PLIP) ZN.232: 5 residues within 4Å: Chain b: C.18, R.20, C.21, C.33, C.36 5 PLIP interactions: 5 interactions with chain b Metal complexes: b:C.18, b:R.20, b:C.21, b:C.33, b:C.36 ZN.233: 4 residues within 4Å: Chain e: C.20, C.23, C.34, C.39 4 PLIP interactions: 4 interactions with chain e Metal complexes: e:C.20, e:C.23, e:C.34, e:C.39 ZN.234: 4 residues within 4Å: Chain g: C.11, C.14, C.71, C.76 3 PLIP interactions: 3 interactions with chain g Metal complexes: g:C.11, g:C.71, g:C.76 ZN.235: 4 residues within 4Å: Chain h: C.38, C.41, C.56, C.59 4 PLIP interactions: 4 interactions with chain h Metal complexes: h:C.38, h:C.41, h:C.56, h:C.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osterman, I.A. et al., Tetracenomycin X inhibits translation by binding within the ribosomal exit tunnel. Nat.Chem.Biol. (2020)

Release Date

2020-07-08

Peptides

60S ribosomal protein L8: D
60S ribosomal protein L3: E
60S ribosomal protein L4: F
60S ribosomal protein L5: G
60S ribosomal protein L6: H
60S ribosomal protein L7: I
60S ribosomal protein L7a: J
60S ribosomal protein L9: K
60S ribosomal protein L10-like: L
60S ribosomal protein L11: M
60S ribosomal protein L13: N
60S ribosomal protein L14: O
60S ribosomal protein L15: P
60S ribosomal protein L13a: Q
60S ribosomal protein L17: R
60S ribosomal protein L18: S
60S ribosomal protein L19: T
60S ribosomal protein L18a: U
60S ribosomal protein L21: V
60S ribosomal protein L22: W
60S ribosomal protein L23: X
60S ribosomal protein L24: Y
60S ribosomal protein L23a: Z
60S ribosomal protein L26: 0
60S ribosomal protein L27: 1
60S ribosomal protein L27a: 2
60S ribosomal protein L29: 3
60S ribosomal protein L30: 4
60S ribosomal protein L31: 5
60S ribosomal protein L32: 6
60S ribosomal protein L35a: 7
60S ribosomal protein L34: 8
60S ribosomal protein L35: 9
60S ribosomal protein L36: a
60S ribosomal protein L37: b
60S ribosomal protein L38: c
60S ribosomal protein L39: d
Ubiquitin-60S ribosomal protein L40: e
60S ribosomal protein L41: f
60S ribosomal protein L36a: g
60S ribosomal protein L37a: h
60S ribosomal protein L28: i
60S ribosomal protein L10a: j

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

D
LA

E
LB

F
LC

G
LD

H
LE

I
LF

J
LG

K
LH

L
LI

M
LJ

N
LL

O
LM

P
LN

Q
LO

R
LP

S
LQ

T
LR

U
LS

V
LT

W
LU

X
LV

Y
LW

Z
LX

0
LY

1
LZ

2
La

3
Lb

4
Lc

5
Ld

6
Le

7
Lf

8
Lg

9
Lh

a
Li

b
Lj

c
Lk

d
Ll

e
Lm

f
Ln

g
Lo

h
Lp

i
Lr

j
Lz

60S ribosomal protein L8

60S ribosomal protein L3

60S ribosomal protein L4

60S ribosomal protein L5

60S ribosomal protein L6

60S ribosomal protein L7

60S ribosomal protein L7a

60S ribosomal protein L9

60S ribosomal protein L10-like

60S ribosomal protein L11

60S ribosomal protein L13

60S ribosomal protein L14

60S ribosomal protein L15

60S ribosomal protein L13a

60S ribosomal protein L17

60S ribosomal protein L18

60S ribosomal protein L19

60S ribosomal protein L18a

60S ribosomal protein L21

60S ribosomal protein L22

60S ribosomal protein L23

60S ribosomal protein L24

60S ribosomal protein L23a

60S ribosomal protein L26

60S ribosomal protein L27

60S ribosomal protein L27a

60S ribosomal protein L29

60S ribosomal protein L30

60S ribosomal protein L31

60S ribosomal protein L32

60S ribosomal protein L35a

60S ribosomal protein L34

60S ribosomal protein L35

60S ribosomal protein L36

60S ribosomal protein L37

60S ribosomal protein L38

60S ribosomal protein L39

Ubiquitin-60S ribosomal protein L40

60S ribosomal protein L41

60S ribosomal protein L36a

60S ribosomal protein L37a

60S ribosomal protein L28

60S ribosomal protein L10a

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