- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 159 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 5 x ZN: ZINC ION(Non-covalent)
ZN.8: 4 residues within 4Å:- Chain 5: C.45, C.48, C.82, C.85
3 PLIP interactions:3 interactions with chain 5- Metal complexes: 5:C.48, 5:C.82, 5:C.85
ZN.10: 4 residues within 4Å:- Chain 8: C.18, C.21, C.33, C.36
4 PLIP interactions:4 interactions with chain 8- Metal complexes: 8:C.18, 8:C.21, 8:C.33, 8:C.36
ZN.11: 6 residues within 4Å:- Chain b: C.20, C.23, C.34, K.36, C.39, T.42
4 PLIP interactions:4 interactions with chain b- Metal complexes: b:C.20, b:C.23, b:C.34, b:C.39
ZN.12: 6 residues within 4Å:- Chain d: C.11, C.14, Q.18, C.71, C.76, S.78
4 PLIP interactions:4 interactions with chain d- Metal complexes: d:C.11, d:C.14, d:C.71, d:C.76
ZN.13: 5 residues within 4Å:- Chain e: C.38, C.41, C.56, S.58, C.59
4 PLIP interactions:4 interactions with chain e- Metal complexes: e:C.38, e:C.41, e:C.56, e:C.59
- 1 x 9UB: [(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]methyl-[oxidanyl-[(2~{Z},6~{Z},10~{Z})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenoxy]phosphoryl]oxy-phosphinic acid(Covalent)
9UB.166: 15 residues within 4Å:- Chain s: F.52, N.53, T.87, L.88, N.168, W.209, G.210, G.211, F.214, N.217, F.256, T.395, Y.398, F.399, L.406
12 PLIP interactions:12 interactions with chain s- Hydrophobic interactions: s:F.52, s:W.209, s:W.209, s:F.214, s:N.217, s:T.395, s:Y.398, s:F.399, s:L.406
- Hydrogen bonds: s:T.87, s:L.88, s:N.168
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Braunger, K. et al., Structural basis for coupling protein transport and N-glycosylation at the mammalian endoplasmic reticulum. Science (2018)
- Release Date
- 2018-03-21
- Peptides
- uL2: A
uL3: B
Ribosomal protein L4: C
60S ribosomal protein L5: D
60S ribosomal protein L6: E
uL30: F
eL8: G
uL6: H
Ribosomal protein L10 (Predicted): I
Ribosomal protein L11: J
eL13: K
Ribosomal protein L14: L
Ribosomal protein L15: M
uL13: N
uL22: O
uL14: P
eL19: Q
eL20: R
eL21: S
eL22: T
uL14: U
Ribosomal protein L24: V
uL23: W
Ribosomal protein L26: X
60S ribosomal protein L27: Y
uL15: Z
60S ribosomal protein L29: 0
eL30: 1
eL31: 2
eL32: 3
eL33: 4
eL34: 5
eL29: 6
60S ribosomal protein L36: 7
Ribosomal protein L37: 8
eL38: 9
eL39: a
eL40: b
60s ribosomal protein l41: c
eL42: d
Ribosomal protein L37a: e
eL28: f
60S acidic ribosomal protein P0: g
Ribosomal protein L12: h
Protein transport protein Sec61 subunit alpha isoform 1: l
Protein transport protein Sec61 subunit gamma: m
Protein transport protein Sec61 subunit beta: n
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,RPN1: o
TMEM258: p
Oligosaccharyltransferase complex subunit OSTC: q
OST4: r
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A: s
DAD1: t
OST48: u
RPN2: v - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
LL
MM
NN
OO
PP
QQ
RR
SS
TT
UU
VV
WW
XX
YY
ZZ
a0
b1
c2
d3
e4
f5
g6
h7
i8
j9
ka
lb
mc
nd
oe
pf
rg
sh
tl
xm
yn
zo
1p
2q
3r
4s
5t
6u
7v
8 - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 6ftg.1
Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
uL2
uL3
Ribosomal protein L4
60S ribosomal protein L5
60S ribosomal protein L6
uL30
eL8
uL6
Ribosomal protein L10 (Predicted)
Ribosomal protein L11
eL13
Ribosomal protein L14
Ribosomal protein L15
uL13
uL22
uL14
eL19
eL20
eL21
eL22
uL14
Ribosomal protein L24
uL23
Ribosomal protein L26
60S ribosomal protein L27
uL15
60S ribosomal protein L29
eL30
eL31
eL32
eL33
eL34
eL29
60S ribosomal protein L36
Ribosomal protein L37
eL38
eL39
eL40
60s ribosomal protein l41
eL42
Ribosomal protein L37a
eL28
60S acidic ribosomal protein P0
Ribosomal protein L12
Protein transport protein Sec61 subunit alpha isoform 1
Protein transport protein Sec61 subunit gamma
Protein transport protein Sec61 subunit beta
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,RPN1
TMEM258
Oligosaccharyltransferase complex subunit OSTC
OST4
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
DAD1
OST48
RPN2
Related Entries With Identical Sequence
1izl.1 | 3j7o.1 | 3j7q.1 | 3jc2.1 | 4pi0.1 | 4pi2.1 | 4uq8.1 | 4v3p.21 | 4wz7.1 | 5a6u.1 | 5gae.1 | 5lqx.1 | 5lqy.1 | 5lqz.1 | 5luf.1 | 5yq7.1 | 6d90.38 | 6d9j.36 | 6d9j.38 | 6e11.1 | 6frk.1 | 6fti.1 | 6ftj.1 | 6gz3.43 | 6gz3.46 | 6gz3.48 | 6gz3.65 | 6gz3.69 | 6gz3.70 | 6gz3.74 more...less...6gz4.43 | 6gz4.46 | 6gz4.48 | 6gz4.65 | 6gz4.69 | 6gz4.70 | 6gz4.74 | 6gz5.43 | 6gz5.46 | 6gz5.48 | 6gz5.65 | 6gz5.69 | 6gz5.70 | 6gz5.74 | 6h82.1 | 6lk8.1 | 6mem.1 | 6mtb.2 | 6mtb.8 | 6mtb.12 | 6mtb.13 | 6mtb.17 | 6mtb.19 | 6mtb.21 | 6mtb.24 | 6mtb.25 | 6mtb.26 | 6mtb.29 | 6mtb.30 | 6mtb.31 | 6mtb.32 | 6mtb.33 | 6mtb.34 | 6mtb.35 | 6mtb.36 | 6mtb.38 | 6mtb.41 | 6mtc.2 | 6mtc.8 | 6mtc.12 | 6mtc.13 | 6mtc.17 | 6mtc.19 | 6mtc.21 | 6mtc.24 | 6mtc.25 | 6mtc.26 | 6mtc.29 | 6mtc.30 | 6mtc.31 | 6mtc.32 | 6mtc.33 | 6mtc.34 | 6mtc.35 | 6mtc.36 | 6mtc.38 | 6mtc.41 | 6mtd.2 | 6mtd.8 | 6mtd.12 | 6mtd.13 | 6mtd.17 | 6mtd.19 | 6mtd.21 | 6mtd.24 | 6mtd.25 | 6mtd.26 | 6mtd.29 | 6mtd.30 | 6mtd.31 | 6mtd.32 | 6mtd.33 | 6mtd.34 | 6mtd.35 | 6mtd.36 | 6mtd.38 | 6mtd.41 | 6mte.2 | 6mte.8 | 6mte.12 | 6mte.13 | 6mte.17 | 6mte.19 | 6mte.21 | 6mte.24 | 6mte.25 | 6mte.26 | 6mte.29 | 6mte.30 | 6mte.31 | 6mte.32 | 6mte.33 | 6mte.34 | 6mte.35 | 6mte.36 | 6mte.38 | 6mte.41 | 6p5j.71 | 6qt9.1 | 6qzp.13 | 6qzp.15 | 6qzp.19 | 6qzp.21 | 6qzp.24 | 6qzp.25 | 6qzp.29 | 6qzp.30 | 6qzp.32 | 6qzp.35 | 6qzp.36 | 6qzp.37 | 6qzp.38 | 6qzp.41 | 6r6p.1 | 6r6p.2 | 6r6p.4 | 6r6p.5 | 6r6p.6 | 6r6p.7 | 6r6p.8 | 6r6p.9 | 6r6p.10 | 6r6p.11 | 6r6p.12 | 6r6p.13 | 6r6p.14 | 6r6p.16 | 6r6p.17 | 6r6p.18 | 6r6p.19 | 6r6p.20 | 6r6p.21 | 6r6p.22 | 6r6p.23 | 6r6p.24 | 6r6p.25 | 6r6p.26 | 6r6p.27 | 6r6p.28 | 6r6p.29 | 6r6p.30 | 6r6p.31 | 6r6p.32 | 6r6p.33 | 6r6p.34 | 6r6p.35 | 6r6p.36 | 6r6p.37 | 6r6p.38 | 6r6p.39 | 6r6p.40 | 6r6p.41 | 6r6p.43 | 6r6p.44 | 6r7q.24 | 6r7q.30 | 6r7q.31 | 6r7q.34 | 6r7q.35 | 6r7q.39 | 6r7q.41 | 6r7q.43 | 6r7q.46 | 6r7q.47 | 6r7q.49 | 6r7q.52 | 6r7q.53 | 6r7q.54 | 6r7q.55 | 6r7q.56 | 6r7q.57 | 6r7q.58 | 6r7q.59 | 6r7q.61 | 6r7q.63 | 6r7q.64 | 6r7q.80 | 6r7q.81 | 6sri.1 | 6srs.1 | 6swa.1 | 6x89.1 | 6xa1.13 | 6xa1.15 | 6xa1.19 | 6xa1.21 | 6xa1.24 | 6xa1.25 | 6xa1.29 | 6xa1.30 | 6xa1.32 | 6xa1.35 | 6xa1.36 | 6xa1.37 | 6xa1.38 | 6xa1.41 | 6y6x.1 | 6zvk.1 | 6zvk.6 | 6zvk.7 | 6zvk.9 | 6zvk.10 | 6zvk.11 | 6zvk.12 | 6zvk.13 | 6zvk.14 | 6zvk.15 | 6zvk.16 | 6zvk.19 | 6zvk.20 | 6zvk.21 | 6zvk.22 | 6zvk.23 | 6zvk.24 | 6zvk.25 | 6zvk.26 | 6zvk.27 | 6zvk.28 | 6zvk.29 | 6zvk.30 | 6zvk.31 | 6zvk.33 | 6zvk.40 | 6zvk.42 | 6zvk.44 | 6zvk.45 | 6zvk.70 | 7l89.1 | 7nfx.1 | 7obr.1 | 7qwq.1 | 7qwr.1 | 7qws.1 | 7toq.1 | 7toq.2 | 7toq.6 | 7toq.7 | 7toq.8 | 7toq.9 | 7toq.10 | 7toq.11 | 7toq.12 | 7toq.13 | 7toq.14 | 7toq.15 | 7toq.17 | 7toq.18 | 7toq.19 | 7toq.20 | 7toq.21 | 7toq.22 | 7toq.23 | 7toq.24 | 7toq.25 | 7toq.26 | 7toq.27 | 7toq.29 | 7toq.30 | 7toq.31 | 7toq.32 | 7toq.33 | 7toq.34 | 7toq.35 | 7toq.36 | 7toq.37 | 7toq.38 | 7toq.39 | 7toq.40 | 7toq.41 | 7toq.42 | 7ucj.2 | 7ucj.8 | 7ucj.9 | 7ucj.10 | 7ucj.12 | 7ucj.13 | 7ucj.17 | 7ucj.19 | 7ucj.24 | 7ucj.25 | 7ucj.26 | 7ucj.29 | 7ucj.30 | 7ucj.31 | 7ucj.32 | 7ucj.33 | 7ucj.34 | 7ucj.35 | 7ucj.36 | 7ucj.41 | 7uck.2 | 7uck.8 | 7uck.9 | 7uck.12 | 7uck.13 | 7uck.17 | 7uck.19 | 7uck.21 | 7uck.24 | 7uck.25 | 7uck.26 | 7uck.29 | 7uck.30 | 7uck.31 | 7uck.32 | 7uck.33 | 7uck.34 | 7uck.35 | 7uck.36 | 7uck.41 | 7xny.25 | 8a8w.1 | 8b5l.1 | 8b6c.1 | 8bf9.1 | 8bpo.1 | 8fru.1 | 8g5z.49 | 8g5z.55 | 8g5z.56 | 8g5z.59 | 8g5z.61 | 8g5z.67 | 8g5z.68 | 8g5z.70 | 8g5z.72 | 8g5z.73 | 8g5z.74 | 8g5z.75 | 8g5z.78 | 8i0p.1 | 8ovc.1