SMTL ID : 6yj4.1

Structure of Yarrowia lipolytica complex I at 2.7 A

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
18 x 3PE: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
6 x SF4: IRON/SULFUR CLUSTER
5 x LMT: DODECYL-BETA-D-MALTOSIDE
8 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE
2 x FES: FE2/S2 (INORGANIC) CLUSTER
1 x FMN: FLAVIN MONONUCLEOTIDE
6 x CDL: CARDIOLIPIN
1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
1 x ZN: ZINC ION
2 x EHZ: ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Grba, D.N. et al., Mitochondrial complex I structure reveals ordered water molecules for catalysis and proton translocation. Nat.Struct.Mol.Biol. (2020)
Release Date
2020-08-12
Peptides
NADH-ubiquinone oxidoreductase chain 3: A
Subunit NUKM of NADH:Ubiquinone Oxidoreductase (Complex I): B
NUGM protein: C
NUCM protein: D
Subunit NUHM of NADH:Ubiquinone Oxidoreductase (Complex I): E
Subunit NUBM of NADH:Ubiquinone Oxidoreductase (Complex I): F
Subunit NUAM of NADH:Ubiquinone Oxidoreductase (Complex I): G
NADH-ubiquinone oxidoreductase chain 1: H
Subunit NUIM of NADH:Ubiquinone Oxidoreductase (Complex I): I
NADH-ubiquinone oxidoreductase chain 6: J
NADH-ubiquinone oxidoreductase chain 4L: K
NADH-ubiquinone oxidoreductase chain 5: L
NADH-ubiquinone oxidoreductase chain 4: M
NADH dehydrogenase subunit 2: N
Subunit NUXM of NADH:Ubiquinone Oxidoreductase (Complex I): O
Subunit NUEM of NADH:Ubiquinone Oxidoreductase (Complex I): P
Subunit NUYM of NADH:Ubiquinone Oxidoreductase (Complex I): Q
Subunit NUMM of protein NADH:Ubiquinone Oxidoreductase (Complex I): R
Subunit NI8M of NADH:Ubiquinone Oxidoreductase (Complex I): S
Acyl carrier protein ACPM1 of NADH:Ubiquinone Oxidoreductase (Complex I): T
Acyl carrier protein ACPM2 of NADH:Ubiquinone Oxidoreductase (Complex I): U
Subunit NUFM of NADH:Ubiquinone Oxidoreductase (Complex I): V
Subunit NB4M of protein NADH:Ubiquinone Oxidoreductase (Complex I): W
Subunit NUPM of NADH:Ubiquinone Oxidoreductase (Complex I): X
Subunit NUJM of NADH:Ubiquinone Oxidoreductase (Complex I): Y
Subunit NB6M of NADH:Ubiquinone Oxidoreductase (Complex I): Z
Subunit NIMM of NADH:Ubiquinone Oxidoreductase (Complex I): 0
subunit NI9M of protein NADH:Ubiquinone Oxidoreductase (Complex I): 1
Subunit NUZM of NADH:Ubiquinone Oxidoreductase (Complex I): 2
Subunit NEBM of NADH:Ubiquinone Oxidoreductase (Complex I): 3
Subunit NIPM of NADH:Ubiquinone Oxidoreductase (Complex I): 4
Subunit N7BM of NADH:Ubiquinone Oxidoreductase (Complex I): 5
Subunit NESM of NADH:Ubiquinone Oxidoreductase (Complex I): 6
subunit NUNM of protein NADH:Ubiquinone Oxidoreductase (Complex I): 7
Subunit NUUM of NADH:Ubiquinone Oxidoreductase (Complex I): 8
subunit NIGM of protein NADH:Ubiquinone Oxidoreductase (Complex I): 9
Subunit NB2M of NADH:Ubiquinone Oxidoreductase (Complex I): a
Subunit NIAM of NADH:Ubiquinone Oxidoreductase (Complex I): b
Subunit NB5M of NADH:Ubiquinone Oxidoreductase (Complex I): c
Subunit NI2M of NADH:Ubiquinone Oxidoreductase (Complex I): d
Subunit NB8M of NADH:Ubiquinone Oxidoreductase (Complex I): e
Subunit NIDM of NADH:Ubiquinone Oxidoreductase (Complex I): f
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
G
H
H
I
I
J
J
K
K
L
L
M
M
N
N
O
O
P
P
Q
Q
R
R
S
S
T
T
U
U
V
V
W
W
X
X
Y
Y
Z
Z
0
a
1
b
2
c
3
d
4
e
5
f
6
g
7
h
8
i
9
j
a
k
b
l
c
m
d
n
e
o
f
p

NADH-ubiquinone oxidoreductase chain 3

Subunit NUKM of NADH:Ubiquinone Oxidoreductase (Complex I)

NUGM protein

NUCM protein

Subunit NUHM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUBM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUAM of NADH:Ubiquinone Oxidoreductase (Complex I)

NADH-ubiquinone oxidoreductase chain 1

Subunit NUIM of NADH:Ubiquinone Oxidoreductase (Complex I)

NADH-ubiquinone oxidoreductase chain 6

NADH-ubiquinone oxidoreductase chain 4L

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 4

NADH dehydrogenase subunit 2

Subunit NUXM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUEM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUYM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUMM of protein NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NI8M of NADH:Ubiquinone Oxidoreductase (Complex I)

Acyl carrier protein ACPM1 of NADH:Ubiquinone Oxidoreductase (Complex I)

Acyl carrier protein ACPM2 of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUFM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB4M of protein NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUPM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUJM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB6M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NIMM of NADH:Ubiquinone Oxidoreductase (Complex I)

subunit NI9M of protein NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUZM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NEBM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NIPM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit N7BM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NESM of NADH:Ubiquinone Oxidoreductase (Complex I)

subunit NUNM of protein NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUUM of NADH:Ubiquinone Oxidoreductase (Complex I)

subunit NIGM of protein NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB2M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NIAM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB5M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NI2M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB8M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NIDM of NADH:Ubiquinone Oxidoreductase (Complex I)

Related Entries With Identical Sequence

4wz7.1 | 6gcs.1 | 6rfq.1 | 6rfr.1 | 6rfs.1 | 6y79.1