SMTL ID : 7o71.1

Cryo-EM structure of a respiratory complex I

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 11 residues within 4Å: Chain A: H.129, D.132, C.133, C.136, Q.138, G.139, C.142, L.144, Q.145, V.235, G.236 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain C, Salt bridges: A:D.132 Metal complexes: A:H.129, A:C.133, A:C.136, A:C.142 pi-Cation interactions: C:F.385 SF4.2: 12 residues within 4Å: Chain A: C.183, I.184, H.185, C.186, T.187, C.189, I.213, C.233, P.234, V.235, A.237, L.238 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.183, A:C.186, A:C.189, A:C.233 SF4.4: 13 residues within 4Å: Chain B: V.207, P.225, S.380, C.381, G.382, Q.383, C.384, C.387, T.425, I.426, C.427, L.429, G.430 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.381, B:C.384, B:C.387, B:C.427 SF4.7: 12 residues within 4Å: Chain F: H.118, C.140, P.141, I.145, C.169, I.170, Y.171, C.172, G.173, Y.174, C.175, E.186 5 PLIP interactions: 5 interactions with chain F, Salt bridges: F:E.186 Metal complexes: F:C.140, F:C.169, F:C.172, F:C.175 SF4.8: 14 residues within 4Å: Chain F: C.130, I.131, A.132, C.133, K.134, L.135, C.136, I.147, Y.162, C.179, P.180, V.181, A.183, I.184 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.130, F:C.133, F:C.136, F:C.179 SF4.9: 13 residues within 4Å: Chain C: R.121, R.141, H.226 Chain G: A.84, C.85, C.86, G.121, T.122, G.148, S.149, C.150, C.180, P.181 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.85, G:C.86, G:C.150, G:C.180

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.3: 9 residues within 4Å: Chain A: R.67, C.69, Y.70, G.78, N.79, C.80, R.81, C.83, C.97 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.69, A:C.80, A:C.83, A:C.97 FES.6: 10 residues within 4Å: Chain E: C.127, T.129, P.131, C.132, C.168, L.169, G.170, A.171, C.172, M.177 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.127, E:C.132, E:C.168, E:C.172

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.5: 18 residues within 4Å: Chain B: G.86, R.87, G.88, G.89, K.97, N.118, D.120, E.121, Y.206, G.209, E.210, E.211, V.244, T.245, N.246, T.249, A.428, L.429 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:Y.206, B:Y.206, B:E.210, B:A.428, B:L.429 Hydrogen bonds: B:R.87, B:G.88, B:N.118, B:N.118, B:G.209, B:E.211, B:E.211, B:N.246, B:N.246 Water bridges: B:G.86, B:G.86, B:G.89 Salt bridges: B:K.97

6 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)

PLC.10: 9 residues within 4Å: Chain G: A.66, V.67, W.70, Q.73, R.199 Chain K: F.41, F.51, V.55 Ligands: PLC.14 5 PLIP interactions: 3 interactions with chain G, 2 interactions with chain K Hydrophobic interactions: G:V.67, G:W.70, K:F.51, K:V.55 Hydrogen bonds: G:Q.73 PLC.14: 14 residues within 4Å: Chain G: W.70 Chain K: Y.21, F.41, V.42, G.43, Y.44, L.47, L.48, F.51 Ligands: PLC.10 Chain b: L.24, N.25, S.26, G.28 7 PLIP interactions: 1 interactions with chain G, 6 interactions with chain K Hydrogen bonds: G:W.70, K:G.43 Hydrophobic interactions: K:L.47, K:L.48, K:L.48, K:F.51 pi-Cation interactions: K:F.41 PLC.17: 12 residues within 4Å: Chain 1: G.42, F.45, Y.46, L.49, Q.53 Chain K: I.326, T.330, F.334 Chain Q: A.39, L.43, L.51, Y.52 12 PLIP interactions: 4 interactions with chain Q, 4 interactions with chain K, 4 interactions with chain 1 Hydrophobic interactions: Q:A.39, Q:L.43, Q:L.51, K:I.326, K:T.330, K:F.334, K:F.334, 1:F.45, 1:F.45, 1:Y.46 pi-Cation interactions: Q:Y.52 Hydrogen bonds: 1:Q.53 PLC.25: 20 residues within 4Å: Chain C: G.35, A.36, L.37, G.38 Chain L: V.404, L.407, L.411, N.418 Chain N: E.161, F.165, Y.166, M.169, F.170, S.173, F.177, I.227 Chain O: L.587, P.589, I.592, N.593 10 PLIP interactions: 7 interactions with chain N, 2 interactions with chain L, 1 interactions with chain O Hydrophobic interactions: N:F.170, N:F.170, N:F.170, N:I.227, L:V.404, L:L.407 Water bridges: N:Y.166 Salt bridges: N:E.161 pi-Cation interactions: N:F.165 Hydrogen bonds: O:N.593 PLC.29: 10 residues within 4Å: Chain I: V.184 Chain N: I.466 Chain O: E.63, L.64, F.65 Ligands: CDL.49 Chain c: A.47, T.48, Y.51 Chain d: Y.35 4 PLIP interactions: 1 interactions with chain I, 2 interactions with chain c, 1 interactions with chain N Hydrophobic interactions: I:V.184, c:A.47, c:T.48, N:I.466 PLC.44: 15 residues within 4Å: Chain 1: R.26, G.27, F.28, R.29, P.30, Y.33 Chain F: K.76, L.79, A.81, F.84, Y.88, L.91 Chain K: W.295 Ligands: CDL.45, CDL.47 10 PLIP interactions: 1 interactions with chain K, 7 interactions with chain F, 2 interactions with chain 1 Hydrophobic interactions: K:W.295, F:L.79, F:A.81, F:F.84, F:F.84, F:F.84, F:L.91, 1:Y.33, 1:Y.33 Salt bridges: F:K.76

18 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)(Covalent)

3PE.11: 12 residues within 4Å: Chain 6: G.12, F.15, G.30, P.33, L.34, Y.36, V.37 Chain I: N.113 Chain N: N.15, R.16 Ligands: 3PE.23, 3PE.48 Ligand excluded by PLIP 3PE.13: 24 residues within 4Å: Chain 1: L.34 Chain C: R.269, L.273 Chain F: A.74, T.75, Y.77, F.78, L.80, M.83, F.84, L.87 Chain K: P.184, L.187, F.190, S.292, W.295, V.296, F.300, F.303, F.311, I.315, L.316, L.319 Chain Q: I.32 Ligand excluded by PLIP 3PE.15: 6 residues within 4Å: Chain K: Y.70 Chain M: F.16, A.20 Chain S: R.219, Y.351 Ligands: CDL.36 Ligand excluded by PLIP 3PE.16: 15 residues within 4Å: Chain 0: W.149, K.151 Chain 1: I.40, Y.43, R.47 Chain K: R.174, V.175, V.176, W.177, C.179, I.180, L.183, L.186, F.253, N.254 Ligand excluded by PLIP 3PE.22: 16 residues within 4Å: Chain L: A.358, Y.359, L.362, A.365, F.369, L.377 Chain N: F.14, Y.28, N.112, L.113, T.116, A.143, P.146, I.150 Ligands: 3PE.23, 3PE.48 Ligand excluded by PLIP 3PE.23: 17 residues within 4Å: Chain 6: T.5, V.8, G.9, G.12 Chain L: L.377, T.451, F.452, F.454, I.455 Chain N: F.60, N.64, F.66, G.67, L.68 Ligands: 3PE.11, 3PE.22, 3PE.24 Ligand excluded by PLIP 3PE.24: 16 residues within 4Å: Chain L: P.376 Chain N: F.38, F.55, N.56, F.57, L.59, L.68, L.123, V.124, L.126, L.127, W.130, I.139, L.140 Ligands: 3PE.23, 3PE.48 Ligand excluded by PLIP 3PE.26: 16 residues within 4Å: Chain N: T.366, P.370, T.374, I.378, F.381 Chain O: W.16, L.20, H.112, R.115, M.122, L.152 Ligands: CDL.49 Chain c: S.14, T.16, G.18, W.19 Ligand excluded by PLIP 3PE.27: 18 residues within 4Å: Chain 5: P.82, D.83 Chain N: L.293, L.418, I.422 Chain O: Q.162, K.165, S.166, S.169, L.172, M.173, F.176, L.238, N.561, I.564, I.565, G.568, L.569 Ligand excluded by PLIP 3PE.28: 21 residues within 4Å: Chain L: F.397 Chain O: R.586, L.587, G.591, I.592, R.594, L.595, K.598, I.643, L.650, Y.651, F.654, S.655 Chain U: W.121, L.124, C.125, A.128, C.129, F.132, F.139 Ligands: 3PE.40 Ligand excluded by PLIP 3PE.30: 14 residues within 4Å: Chain K: E.101, L.102, N.103, L.104 Chain M: N.2, F.4 Chain P: F.8, I.11, A.44, M.45, Y.48, L.49, S.56, L.57 Ligand excluded by PLIP 3PE.31: 12 residues within 4Å: Chain K: I.72 Chain M: P.12 Chain P: L.15, L.18, K.27, V.31, L.34, Y.35, A.38, V.41, I.42 Ligands: CDL.36 Ligand excluded by PLIP 3PE.33: 21 residues within 4Å: Chain K: P.318, G.322 Chain M: I.99, V.103, I.106, N.107, N.109 Chain Q: N.5, Y.15, L.16, W.18, S.19, R.23, L.26, F.27, A.29, F.30, A.31, G.33, I.34 Ligands: CDL.32 Ligand excluded by PLIP 3PE.35: 10 residues within 4Å: Chain G: W.207 Chain S: E.134, T.135, K.136, Q.302, A.303, I.304, W.305, W.306 Ligands: T7X.21 Ligand excluded by PLIP 3PE.37: 12 residues within 4Å: Chain N: S.173, G.174, I.216, V.220 Chain U: D.93, G.94, W.95, A.127, G.130, L.131, W.134 Ligands: LMN.38 Ligand excluded by PLIP 3PE.39: 26 residues within 4Å: Chain L: P.216, I.262, I.265, L.266 Chain O: N.602, L.606, L.620, I.623, S.627, L.628, L.630, L.631, V.634, V.645, I.649, L.650, I.652, L.653 Chain U: V.35, A.39, V.42, A.43, A.46, R.47, L.50, F.139 Ligand excluded by PLIP 3PE.40: 10 residues within 4Å: Chain J: K.47, Y.48 Chain O: R.586 Chain U: P.116, A.117, G.120, W.121, V.123 Ligands: LMN.12, 3PE.28 Ligand excluded by PLIP 3PE.48: 14 residues within 4Å: Chain 6: A.16, F.19, K.23, A.29 Chain L: Y.359, I.366, I.448 Chain N: N.15, T.116, A.120, L.147 Ligands: 3PE.11, 3PE.22, 3PE.24 Ligand excluded by PLIP

2 x LMN: Lauryl Maltose Neopentyl Glycol(Non-covalent)

LMN.12: 14 residues within 4Å: Chain 5: K.31, A.32, P.35 Chain J: Y.48, T.49, R.50, G.53, T.56, L.57 Chain U: K.113, L.114, V.115, I.119 Ligands: 3PE.40 9 PLIP interactions: 5 interactions with chain J, 4 interactions with chain U Hydrophobic interactions: J:Y.48, J:Y.48, J:T.56, J:L.57, U:I.119, U:I.119 Hydrogen bonds: J:R.50, U:K.113, U:V.115 LMN.38: 26 residues within 4Å: Chain L: Y.396, S.399, I.400 Chain N: L.180, V.184, D.205, L.206, I.209, L.212, G.213 Chain U: Y.82, K.92, D.93, G.94, H.97, G.133, W.134, G.136, A.137, A.145, H.160, Q.161, T.162, F.163, W.164 Ligands: 3PE.37 22 PLIP interactions: 6 interactions with chain N, 11 interactions with chain U, 5 interactions with chain L Hydrophobic interactions: N:L.180, N:V.184, N:L.206, N:I.209, N:L.212, U:W.134, U:W.134, U:F.163, U:W.164, L:Y.396, L:Y.396, L:Y.396, L:Y.396, L:I.400 Hydrogen bonds: N:D.205, U:Y.82, U:D.93, U:G.94, U:A.145, U:H.160, U:F.163, U:W.164

3 x T7X: Phosphatidylinositol(Non-covalent)

T7X.18: 17 residues within 4Å: Chain 2: W.59, L.60 Chain 6: K.18, R.25, Y.31, Y.32, G.35, F.38, S.39, A.42, W.43, L.46 Chain L: S.437, V.438, Y.441, S.445 Ligands: CPL.19 11 PLIP interactions: 7 interactions with chain 6, 3 interactions with chain L, 1 interactions with chain 2 Hydrophobic interactions: 6:A.42, 6:W.43, 6:L.46, L:Y.441 Hydrogen bonds: 6:R.25, 6:Y.31, 6:S.39, L:S.437, L:S.437, 2:W.59 Salt bridges: 6:K.18 T7X.20: 22 residues within 4Å: Chain H: L.8, F.12 Chain L: I.163, L.167, Y.170, N.198, L.199, I.202, A.203, I.255, N.256, S.257, L.258, V.259 Chain O: L.629, V.632, N.636 Chain P: I.106, S.107, G.108, M.110 Chain U: N.140 15 PLIP interactions: 8 interactions with chain L, 1 interactions with chain P, 3 interactions with chain H, 1 interactions with chain U, 2 interactions with chain O Hydrophobic interactions: L:I.163, L:L.167, L:Y.170, L:L.199, L:A.203, P:I.106, H:L.8, H:L.8, H:F.12, O:L.629, O:V.632 Hydrogen bonds: L:S.257, L:L.258, L:V.259, U:N.140 T7X.21: 17 residues within 4Å: Chain G: L.64, V.67, A.68, I.203, T.204, W.207 Chain K: V.55, L.59 Chain M: I.23, L.24, L.25, A.26, V.27 Chain S: W.305, W.306 Ligands: 3PE.35, CDL.36 10 PLIP interactions: 4 interactions with chain G, 2 interactions with chain M, 2 interactions with chain K, 2 interactions with chain S Hydrophobic interactions: G:V.67, G:V.67, G:A.68, G:T.204, K:V.55, K:L.59, S:W.305, S:W.305 Hydrogen bonds: M:L.24, M:L.25

1 x CPL: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

CPL.19: 24 residues within 4Å: Chain 6: L.13, W.43, L.46, V.49, L.50, V.53 Chain L: V.37, S.40, Y.43, Y.67, M.70, F.74, L.310, Y.311, T.314, L.378, L.449, G.453, Y.456, I.460, I.463, F.464, Y.467 Ligands: T7X.18 15 PLIP interactions: 10 interactions with chain L, 5 interactions with chain 6 Hydrophobic interactions: L:F.74, L:F.74, L:Y.311, L:T.314, L:L.378, L:L.449, L:Y.456, L:Y.456, L:I.460, 6:L.13, 6:W.43, 6:L.46, 6:V.49, 6:L.50 pi-Cation interactions: L:Y.43

6 x CDL: CARDIOLIPIN(Non-covalent)

CDL.32: 22 residues within 4Å: Chain 2: K.73, V.77, M.80, L.81, F.83, A.84, F.87 Chain L: L.4, S.8, T.11, F.12, M.15 Chain M: L.96 Chain Q: N.5, G.7, F.8, W.9, Y.15, F.30, I.34 Ligands: 3PE.33, CDL.46 22 PLIP interactions: 6 interactions with chain Q, 1 interactions with chain L, 14 interactions with chain 2, 1 interactions with chain M Hydrophobic interactions: Q:F.30, Q:F.30, Q:F.30, Q:I.34, L:L.4, 2:M.80, 2:L.81, 2:F.83, 2:F.83, 2:F.83, 2:F.83, 2:F.83, 2:A.84, 2:F.87, 2:F.87, 2:F.87, 2:F.87, M:L.96 Hydrogen bonds: Q:N.5, Q:F.8, 2:R.76 Salt bridges: 2:K.73 CDL.36: 25 residues within 4Å: Chain K: I.71 Chain M: F.16, A.20, I.23, L.24, Y.28 Chain S: R.216, R.219, S.220, P.221, C.222, V.224, L.289, L.293, Y.294, Y.297, A.300, T.301, A.303, I.304, W.306, T.308 Ligands: 3PE.15, T7X.21, 3PE.31 24 PLIP interactions: 17 interactions with chain S, 7 interactions with chain M Hydrophobic interactions: S:V.224, S:L.289, S:L.293, S:Y.294, S:Y.297, S:Y.297, S:Y.297, S:A.303, S:I.304, S:I.304, S:I.304, S:W.306, M:F.16, M:A.20, M:I.23, M:L.24, M:Y.28, M:Y.28, M:Y.28 Hydrogen bonds: S:Y.297 Water bridges: S:Y.309, S:Y.309 Salt bridges: S:R.216, S:R.219 CDL.45: 10 residues within 4Å: Chain 1: R.26, G.27, F.28, R.29, L.31, V.32, Y.33, A.35 Chain F: Y.88 Ligands: PLC.44 13 PLIP interactions: 13 interactions with chain 1 Hydrophobic interactions: 1:F.28, 1:F.28, 1:V.32, 1:V.32, 1:Y.33, 1:Y.33, 1:A.35 Hydrogen bonds: 1:G.27, 1:R.29 Salt bridges: 1:R.26, 1:R.26, 1:R.29, 1:R.29 CDL.46: 28 residues within 4Å: Chain 2: H.27, K.29, A.84, F.87, T.128, S.129, S.130, L.131, P.154, W.155, F.156, F.158, V.159, N.160 Chain K: Y.332 Chain L: I.3 Chain M: N.85, Y.86, F.88, T.89, I.90, L.93 Chain P: F.160, L.163, V.164 Chain Q: A.40, L.41 Ligands: CDL.32 27 PLIP interactions: 5 interactions with chain M, 1 interactions with chain L, 1 interactions with chain K, 13 interactions with chain 2, 4 interactions with chain P, 3 interactions with chain Q Hydrophobic interactions: M:Y.86, M:F.88, M:I.90, M:L.93, L:I.3, K:Y.332, 2:F.87, 2:P.154, 2:P.154, 2:W.155, 2:F.158, 2:F.158, 2:F.158, P:F.160, P:L.163, P:L.163, P:V.164, Q:A.40, Q:L.41, Q:L.41 Hydrogen bonds: M:N.85, 2:S.130, 2:S.130, 2:F.158, 2:N.160 Salt bridges: 2:K.29, 2:K.29 CDL.47: 14 residues within 4Å: Chain 4: S.17, W.21, L.24, R.25 Chain F: Y.88, L.91, F.95 Chain R: A.2, I.3, F.5, L.8, G.12 Ligands: PLC.44 Chain b: L.5 19 PLIP interactions: 3 interactions with chain 4, 6 interactions with chain R, 5 interactions with chain b, 5 interactions with chain F Hydrophobic interactions: 4:L.24, R:I.3, R:F.5, R:L.8, b:L.5, F:Y.88, F:F.95, F:F.95, F:F.95, F:F.95 Water bridges: 4:K.18, 4:K.18, b:L.5, b:L.5, b:L.5, b:L.5 Hydrogen bonds: R:A.2, R:I.3, R:I.3 CDL.49: 36 residues within 4Å: Chain I: Y.169, A.173, L.176, I.177, L.180, M.183 Chain N: L.90, V.333, F.337, Q.371, T.374, Y.375, I.378, I.448, K.451, F.452, N.455, I.456, I.458, I.459, S.460, I.463, I.464 Chain O: L.17, F.21 Ligands: 3PE.26, PLC.29 Chain c: M.15, I.36, G.39, L.40 Chain d: Y.20, K.23, W.24, A.25, V.27 26 PLIP interactions: 14 interactions with chain N, 3 interactions with chain O, 1 interactions with chain c, 7 interactions with chain d, 1 interactions with chain I Hydrophobic interactions: N:L.90, N:L.90, N:V.333, N:T.374, N:Y.375, N:I.378, N:I.456, N:I.458, N:I.459, N:I.463, N:I.463, N:I.464, O:L.17, O:F.21, O:F.21, c:I.36, d:W.24, d:W.24, d:W.24, d:W.24, d:A.25, d:V.27, I:L.180 Hydrogen bonds: N:N.455 Salt bridges: N:K.451, d:K.23

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.34: 23 residues within 4Å: Chain S: G.60, N.62, G.63, F.64, L.65, R.85, L.109, L.128, I.129, G.130, R.131, F.138, V.143, V.166, S.167, A.168, F.179, K.183, P.202, A.203, P.204, M.205, K.211 28 PLIP interactions: 27 interactions with chain S, 1 interactions with chain G Hydrophobic interactions: S:A.168, S:P.202 Hydrogen bonds: S:G.60, S:N.62, S:N.62, S:G.63, S:F.64, S:L.65, S:L.128, S:G.130, S:K.183, S:M.205 Water bridges: S:G.66, S:R.85, S:R.85, S:R.85, S:R.85, S:R.131, S:R.131, S:R.131, S:E.132, S:T.135 Salt bridges: S:R.85, S:R.131, S:R.131, S:K.211, G:K.210 pi-Cation interactions: S:R.85

1 x ZN: ZINC ION(Non-covalent)

ZN.41: 4 residues within 4Å: Chain V: C.97, H.110, C.125, C.128 4 PLIP interactions: 4 interactions with chain V Metal complexes: V:C.97, V:H.110, V:C.125, V:C.128

2 x ZMP: S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate(Covalent)

ZMP.42: 15 residues within 4Å: Chain W: S.66 Chain X: Q.22, T.25, F.32, I.56, E.59, F.60, H.63, R.64, F.65, V.66, Q.72, L.75, G.79, Y.99 15 PLIP interactions: 1 interactions with chain W, 14 interactions with chain X Hydrogen bonds: W:S.66, X:Q.22, X:H.63, X:R.64 Hydrophobic interactions: X:Q.22, X:T.25, X:F.32, X:F.32, X:I.56, X:E.59, X:F.60, X:F.60, X:Y.99, X:Y.99 Salt bridges: X:R.64 ZMP.43: 20 residues within 4Å: Chain Y: S.89, L.90 Chain Z: P.6, F.7, N.11, K.12, V.15, S.22, L.25, I.43, K.46, F.47, N.50, A.51, L.59, L.63, T.66, H.69, L.70, F.73 14 PLIP interactions: 12 interactions with chain Z, 2 interactions with chain Y Hydrophobic interactions: Z:K.12, Z:V.15, Z:V.15, Z:L.25, Z:I.43, Z:F.47, Z:L.59, Z:L.70, Z:F.73 Hydrogen bonds: Z:N.11, Z:T.66, Y:S.89, Y:L.90 Salt bridges: Z:K.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parey, K. et al., High-resolution structure and dynamics of mitochondrial complex I-Insights into the proton pumping mechanism. Sci Adv (2021)

Release Date

2021-11-10

Peptides

NADH-ubiquinone oxidoreductase 78 kDa subunit: A
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial: B
NUCM protein: C
Subunit NUGM of NADH:Ubiquinone Oxidoreductase (Complex I): D
Subunit NUHM of NADH:Ubiquinone Oxidoreductase (Complex I): E
Subunit NUIM of NADH:Ubiquinone Oxidoreductase (Complex I): F
Subunit NUKM of NADH:Ubiquinone Oxidoreductase (Complex I): G
NADH-ubiquinone oxidoreductase chain 4L: H
Subunit NESM of NADH:Ubiquinone Oxidoreductase (Complex I): I
Subunit NB5M of NADH:Ubiquinone Oxidoreductase (Complex I): J
NADH-ubiquinone oxidoreductase chain 1: K
NADH dehydrogenase subunit 2: L
NADH-ubiquinone oxidoreductase chain 3: M
NADH-ubiquinone oxidoreductase chain 4: N
NADH-ubiquinone oxidoreductase chain 5: O
NADH-ubiquinone oxidoreductase chain 6: P
subunit NI9M of protein NADH:Ubiquinone Oxidoreductase (Complex I): Q
Subunit NIMM of NADH:Ubiquinone Oxidoreductase (Complex I): R
NADH-ubiquinone oxidoreductase 40 kDa subunit: S
Subunit NUFM of NADH:Ubiquinone Oxidoreductase (Complex I): T
Subunit NUJM of NADH:Ubiquinone Oxidoreductase (Complex I): U
Subunit NUMM of protein NADH:Ubiquinone Oxidoreductase (Complex I): V
Acyl carrier protein ACPM1 of NADH:Ubiquinone Oxidoreductase (Complex I): W
Subunit NB4M of protein NADH:Ubiquinone Oxidoreductase (Complex I): X
Acyl carrier protein ACPM2 of NADH:Ubiquinone Oxidoreductase (Complex I): Y
Subunit NI2M of NADH:Ubiquinone Oxidoreductase (Complex I): Z
Subunit NUPM of NADH:Ubiquinone Oxidoreductase (Complex I): 0
Subunit NB6M of NADH:Ubiquinone Oxidoreductase (Complex I): 1
Subunit NUXM of NADH:Ubiquinone Oxidoreductase (Complex I): 2
Subunit NUYM of NADH:Ubiquinone Oxidoreductase (Complex I): 3
Subunit NUZM of NADH:Ubiquinone Oxidoreductase (Complex I): 4
Subunit NIAM of NADH:Ubiquinone Oxidoreductase (Complex I): 5
Subunit NEBM of NADH:Ubiquinone Oxidoreductase (Complex I): 6
Subunit NB2M of NADH:Ubiquinone Oxidoreductase (Complex I): 7
Subunit NIDM of NADH:Ubiquinone Oxidoreductase (Complex I): 8
Subunit NUVM of NADH:Ubiquinone Oxidoreductase (Complex I): 9
Subunit NI8M of NADH:Ubiquinone Oxidoreductase (Complex I): a
Subunit N7BM of NADH:Ubiquinone Oxidoreductase (Complex I): b
Subunit NUUM of NADH:Ubiquinone Oxidoreductase (Complex I): c
Subunit NUNM of NADH:Ubiquinone Oxidoreductase (Complex I): d
Subunit NB8M of NADH:Ubiquinone Oxidoreductase (Complex I): e
Subunit NIPM of NADH:Ubiquinone Oxidoreductase (Complex I): f

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
G

E
H

F
I

G
K

H
L

I
S

J
j

K
1

L
2

M
3

N
4

O
5

P
6

Q
g

R
D

S
E

T
F

U
J

V
M

W
O

X
P

Y
Q

Z
R

0
U

1
W

2
X

3
Y

4
Z

5
a

6
b

7
c

8
d

9
e

a
f

b
h

c
i

d
n

e
8

f
9

Membrane

We predict this structure to be a membrane protein.
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NADH-ubiquinone oxidoreductase 78 kDa subunit

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

NUCM protein

Subunit NUGM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUHM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUIM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUKM of NADH:Ubiquinone Oxidoreductase (Complex I)

NADH-ubiquinone oxidoreductase chain 4L

Subunit NESM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB5M of NADH:Ubiquinone Oxidoreductase (Complex I)

NADH-ubiquinone oxidoreductase chain 1

NADH dehydrogenase subunit 2

NADH-ubiquinone oxidoreductase chain 3

NADH-ubiquinone oxidoreductase chain 4

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 6

subunit NI9M of protein NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NIMM of NADH:Ubiquinone Oxidoreductase (Complex I)

NADH-ubiquinone oxidoreductase 40 kDa subunit

Subunit NUFM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUJM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUMM of protein NADH:Ubiquinone Oxidoreductase (Complex I)

Acyl carrier protein ACPM1 of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB4M of protein NADH:Ubiquinone Oxidoreductase (Complex I)

Acyl carrier protein ACPM2 of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NI2M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUPM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB6M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUXM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUYM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUZM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NIAM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NEBM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB2M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NIDM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUVM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NI8M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit N7BM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUUM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUNM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB8M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NIPM of NADH:Ubiquinone Oxidoreductase (Complex I)

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