SMTL ID : 7b0n.1

A 3.7-angstrom structure of Yarrowia lipolytica complex I with an R121M mutation in NUCM.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

6 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)

PLC.1: 22 residues within 4Å: Chain D: G.35, A.36, L.37, G.38 Chain L: G.588, P.589, I.592, N.593, L.596 Chain M: E.161, R.162, F.165, Y.166, M.169, F.170, S.173 Chain N: V.404, L.407, I.408, L.411, N.418 Ligands: 3PE.17 5 PLIP interactions: 1 interactions with chain N, 2 interactions with chain M, 2 interactions with chain L Hydrophobic interactions: N:L.407, L:I.592 Salt bridges: M:E.161 pi-Cation interactions: M:F.165 Hydrogen bonds: L:N.593 PLC.9: 12 residues within 4Å: Chain 5: L.24, N.25, S.26, G.28 Chain B: W.70 Chain H: Y.21, F.41, V.42, G.43, Y.44, L.47, L.48 7 PLIP interactions: 5 interactions with chain H, 1 interactions with chain B, 1 interactions with chain 5 Hydrophobic interactions: H:Y.44, H:Y.44, H:L.47, H:L.48 Hydrogen bonds: H:Y.44, B:W.70, 5:N.25 PLC.14: 29 residues within 4Å: Chain 8: V.12, S.14, M.15, T.16, G.18, W.19 Chain L: W.16, L.17, L.20, F.21, H.112, R.115, L.119, M.122, F.145, V.148, L.152, V.158 Chain M: T.366, T.367, P.370, A.373, T.374, I.377, I.378, F.381, T.432, L.462 Ligands: CDL.19 10 PLIP interactions: 3 interactions with chain 8, 5 interactions with chain L, 2 interactions with chain M Hydrogen bonds: 8:T.16, 8:T.16, 8:G.18 Hydrophobic interactions: L:L.20, L:L.152, M:T.366, M:T.374 Salt bridges: L:H.112, L:R.115, L:R.115 PLC.15: 23 residues within 4Å: Chain L: L.293, I.296, C.297, N.299, V.423, L.424, V.427, K.431, L.435, V.521, I.525, N.529, F.536, N.537, I.543, V.546, Y.547, F.550 Chain d: N.28, W.29, I.30, S.31, H.75 5 PLIP interactions: 4 interactions with chain L, 1 interactions with chain d Hydrophobic interactions: L:I.543 Hydrogen bonds: L:N.529, d:S.31 Salt bridges: L:K.431 pi-Cation interactions: L:Y.547 PLC.21: 26 residues within 4Å: Chain 3: W.42, V.48, L.49, V.52 Chain N: S.40, Y.43, S.63, F.66, Y.67, M.70, L.71, F.74, F.307, L.310, Y.311, T.314, I.318, L.378, L.449, G.453, Y.456, I.460, I.463, F.464, Y.467, F.468 8 PLIP interactions: 7 interactions with chain N, 1 interactions with chain 3 Hydrophobic interactions: N:Y.311, N:T.314, N:L.449, N:Y.456, N:I.460, N:I.460, 3:L.49 pi-Cation interactions: N:Y.43 PLC.36: 15 residues within 4Å: Chain 3: K.17, R.24, Y.30, Y.31, G.34, F.37, S.38, A.41 Chain N: S.437, V.438, Y.441, I.442 Chain O: F.56, W.59, L.60 6 PLIP interactions: 2 interactions with chain N, 2 interactions with chain O, 2 interactions with chain 3 Hydrophobic interactions: N:V.438, O:L.60 Hydrogen bonds: N:S.437 pi-Cation interactions: O:W.59, 3:Y.31 Salt bridges: 3:K.17

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.2: 11 residues within 4Å: Chain E: C.127, T.129, P.131, C.132, C.168, L.169, G.170, A.171, C.172, M.177 Chain F: G.125 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.127, E:C.132, E:C.168, E:C.172 FES.7: 11 residues within 4Å: Chain G: R.67, Y.68, C.69, Y.70, G.78, C.80, R.81, M.82, C.83, A.95, C.97 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.69, G:C.80, G:C.83, G:C.97

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.3: 23 residues within 4Å: Chain F: G.86, R.87, G.88, G.89, A.90, K.97, N.118, D.120, E.121, G.122, D.129, Y.206, V.207, G.209, E.210, E.211, V.244, T.245, N.246, T.249, C.427, A.428, L.429 14 PLIP interactions: 14 interactions with chain F Hydrophobic interactions: F:Y.206, F:E.210, F:E.210, F:A.428, F:L.429 Hydrogen bonds: F:R.87, F:G.88, F:D.120, F:G.122, F:G.209, F:V.244, F:N.246, F:T.249 Salt bridges: F:K.97

5 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.4: 13 residues within 4Å: Chain F: V.207, P.225, S.380, C.381, G.382, Q.383, C.384, C.387, T.425, I.426, C.427, L.429, G.430 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.381, F:C.384, F:C.387, F:C.427 SF4.5: 14 residues within 4Å: Chain D: M.378, I.382 Chain G: H.129, D.132, C.133, C.136, Q.138, G.139, C.142, L.144, Q.145, R.182, V.235, G.236 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:H.129, G:C.133, G:C.136, G:C.142 SF4.6: 14 residues within 4Å: Chain G: M.180, C.183, I.184, H.185, C.186, T.187, R.188, C.189, I.213, C.233, P.234, V.235, A.237, L.238 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.183, G:C.186, G:C.189, G:C.233 SF4.12: 15 residues within 4Å: Chain I: L.84, C.94, I.95, A.96, C.97, K.98, L.99, C.100, I.111, Y.126, C.143, P.144, V.145, A.147, I.148 4 PLIP interactions: 4 interactions with chain I, Metal complexes: I:C.94, I:C.97, I:C.100, I:C.143 SF4.13: 14 residues within 4Å: Chain I: H.82, C.104, P.105, A.108, I.109, I.128, C.133, I.134, Y.135, C.136, G.137, Y.138, C.139, E.150 5 PLIP interactions: 5 interactions with chain I, Salt bridges: I:E.150 Metal complexes: I:C.104, I:C.133, I:C.136, I:C.139

13 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)

3PE.8: 9 residues within 4Å: Chain H: R.174, V.175, V.176, W.177, I.180, F.253, N.254 Chain Z: Y.42, R.46 5 PLIP interactions: 2 interactions with chain H, 3 interactions with chain Z Hydrogen bonds: H:R.174, H:N.254, Z:R.46, Z:R.46 Salt bridges: Z:R.46 3PE.10: 35 residues within 4Å: Chain 1: N.22, H.25, F.28, I.32 Chain D: R.269, I.270, L.273 Chain H: P.184, L.187, I.188, F.190, I.191, P.201, F.202, S.292, W.295, V.296, F.300, F.303, N.310, F.311, I.315, L.316, L.319 Chain I: A.38, T.39, Y.41, F.42, L.43, L.44, M.47, F.48, L.51 Chain Z: L.33, L.36 17 PLIP interactions: 8 interactions with chain H, 7 interactions with chain I, 1 interactions with chain D, 1 interactions with chain Z Hydrophobic interactions: H:P.184, H:I.188, H:I.188, H:F.190, H:W.295, H:F.303, H:L.319, I:T.39, I:Y.41, I:F.42, I:L.44, I:F.48, Z:L.33 Hydrogen bonds: H:N.310, I:Y.41, I:Y.41 Salt bridges: D:R.269 3PE.11: 17 residues within 4Å: Chain 2: I.30 Chain H: W.295 Chain I: T.39, K.40, L.43, A.45, F.48, R.49, Y.52 Chain Z: A.24, R.25, G.26, F.27, R.28, P.29, Y.32 Ligands: CDL.31 7 PLIP interactions: 2 interactions with chain Z, 4 interactions with chain I, 1 interactions with chain H Hydrophobic interactions: Z:Y.32, I:A.45, I:F.48, I:F.48, H:W.295 Hydrogen bonds: Z:G.26 Salt bridges: I:K.40 3PE.16: 33 residues within 4Å: Chain L: Q.162, K.165, S.166, L.168, S.169, L.172, M.173, F.176, F.180, I.221, M.224, G.231, L.232, L.238, E.241, L.560, N.561, I.564, I.565, K.567, G.568, L.569, T.571 Chain M: L.290, L.293, I.415, L.418, L.419, I.422, K.426 Chain b: S.81, P.82, D.83 12 PLIP interactions: 8 interactions with chain L, 3 interactions with chain M, 1 interactions with chain b Hydrophobic interactions: L:L.172, L:L.232, L:I.565, L:I.565, M:I.422, M:I.422 Hydrogen bonds: L:Q.162, L:Q.162, L:N.561, b:D.83 Salt bridges: L:K.165, M:K.426 3PE.17: 32 residues within 4Å: Chain L: R.586, L.587, G.588, G.591, I.592, R.594, L.595, L.596, K.598, A.599, I.643, L.646, I.647, L.650, Y.651, F.654, S.655 Chain N: L.269, V.273, F.397, V.404, I.408 Chain Y: W.103, L.106, C.107, A.110, C.111, F.114, F.121 Ligands: PLC.1, 3PE.18, 3PE.30 11 PLIP interactions: 7 interactions with chain L, 4 interactions with chain Y Hydrophobic interactions: L:I.592, L:L.595, L:I.643, L:I.647, L:L.650, L:F.654, L:F.654, Y:W.103, Y:A.110, Y:F.114, Y:F.121 3PE.18: 40 residues within 4Å: Chain J: I.99 Chain L: N.602, N.605, L.606, L.620, I.623, T.624, S.627, L.628, L.630, L.631, L.633, V.634, V.645, L.646, I.649, L.650, I.652, L.653 Chain N: P.216, I.262, L.263, I.265, L.266, L.269, F.397, V.401 Chain Y: V.17, G.20, A.21, V.23, V.24, A.25, A.28, R.29, L.32, F.53, F.121 Ligands: 3PE.17, 3PE.22 20 PLIP interactions: 6 interactions with chain Y, 9 interactions with chain L, 5 interactions with chain N Hydrophobic interactions: Y:A.21, Y:V.24, Y:A.25, Y:F.121, Y:F.121, L:T.624, L:L.630, L:V.645, L:L.646, L:I.649, L:I.649, L:L.650, L:L.650, N:P.216, N:I.265, N:L.266, N:L.269, N:F.397 Salt bridges: Y:R.29 Hydrogen bonds: L:I.652 3PE.20: 20 residues within 4Å: Chain M: N.110, L.113, T.116, L.117, P.146, L.147, I.150, I.154 Chain N: I.354, A.358, Y.359, V.361, L.362, A.365, I.366, F.369, P.376, L.377, I.421 Ligands: 3PE.37 3 PLIP interactions: 3 interactions with chain N Hydrophobic interactions: N:I.354, N:L.362, N:I.366 3PE.22: 36 residues within 4Å: Chain J: I.99, I.102, V.103, L.104, I.106, S.107, G.108, M.110, I.111, L.118, K.121 Chain K: L.8, V.9, F.12, M.32 Chain L: I.625, L.628, L.629, L.630, V.632, L.633, M.635, N.636 Chain N: I.163, I.166, L.167, Y.170, N.198, L.199, I.202, A.203, L.206, S.257, L.258, V.259 Ligands: 3PE.18 14 PLIP interactions: 7 interactions with chain N, 2 interactions with chain K, 3 interactions with chain J, 2 interactions with chain L Hydrophobic interactions: N:L.167, N:Y.170, N:L.199, N:L.206, K:L.8, K:F.12, J:V.103, J:L.104, J:L.118, L:L.628, L:V.632 Hydrogen bonds: N:N.198, N:L.258, N:V.259 3PE.30: 22 residues within 4Å: Chain L: S.583, R.586, L.587, R.594, L.595 Chain Y: L.96, P.98, A.99, I.101, G.102, W.103, V.105, L.106, C.107, A.110 Ligands: 3PE.17, LMT.28 Chain c: K.47, Y.48, T.56, L.60, V.61 8 PLIP interactions: 1 interactions with chain c, 5 interactions with chain Y, 2 interactions with chain L Hydrogen bonds: c:Y.48, Y:W.103 Hydrophobic interactions: Y:W.103, Y:W.103, Y:L.106, Y:L.106, L:L.587 Salt bridges: L:R.586 3PE.32: 19 residues within 4Å: Chain 1: A.35, G.36, A.39, L.43, L.51, Y.52 Chain H: I.326, I.327, T.330, I.333, F.334 Chain X: W.149 Chain Z: C.40, G.41, F.44, Y.45, L.48, G.49, Q.52 12 PLIP interactions: 4 interactions with chain 1, 4 interactions with chain Z, 1 interactions with chain X, 3 interactions with chain H Hydrophobic interactions: 1:A.35, 1:A.39, 1:L.43, 1:L.51, Z:F.44, Z:F.44, H:I.326, H:F.334, H:F.334 Hydrogen bonds: Z:Q.52, Z:Q.52, X:W.149 3PE.35: 28 residues within 4Å: Chain 1: N.5, Y.15, L.16, W.18, S.19, R.23, L.26, F.27, A.29, F.30, A.31, G.33, I.34 Chain A: L.96, I.99, I.100, F.102, V.103, I.106, N.107, N.109 Chain H: P.318, F.321, G.322, L.325 Chain N: I.7, M.15 Ligands: CDL.34 14 PLIP interactions: 2 interactions with chain H, 5 interactions with chain A, 7 interactions with chain 1 Hydrophobic interactions: H:P.318, H:L.325, A:I.99, A:I.100, A:V.103, 1:Y.15, 1:F.30, 1:F.30, 1:F.30, 1:F.30 Hydrogen bonds: A:N.107, A:N.109, 1:N.5 Salt bridges: 1:R.23 3PE.37: 14 residues within 4Å: Chain 3: F.18, K.22, P.27, A.28, G.29 Chain 6: R.117 Chain M: L.11, F.14, N.15, L.18 Chain N: Y.359, L.362 Ligands: 3PE.20, 3PE.38 6 PLIP interactions: 2 interactions with chain 3, 3 interactions with chain M, 1 interactions with chain N Hydrophobic interactions: 3:F.18, M:L.11, M:F.14 Salt bridges: 3:K.22 Hydrogen bonds: M:N.15, N:Y.359 3PE.38: 13 residues within 4Å: Chain 3: G.11, F.14, A.15, F.18, A.28, G.29, P.32, Y.35 Chain 6: N.113 Chain M: L.8, L.11, N.15 Ligands: 3PE.37 3 PLIP interactions: 1 interactions with chain 6, 2 interactions with chain 3 Hydrogen bonds: 6:N.113, 3:G.29 Hydrophobic interactions: 3:F.18

5 x CDL: CARDIOLIPIN(Non-covalent)

CDL.19: 49 residues within 4Å: Chain 6: Y.169, A.173, L.176, I.177, L.179, L.180, I.181, M.183, V.184, Y.185 Chain 7: Y.39, V.40, K.42, W.43, A.44, V.46, S.47, L.50, V.51, F.53, Y.54 Chain 8: M.15 Chain L: L.17, F.21, F.22 Chain M: T.87, L.90, L.91, L.94, V.333, F.337, Q.371, T.374, Y.375, I.378, I.448, K.451, F.452, N.455, I.456, I.458, I.459, S.460, L.462, I.463, I.464, I.470, M.471 Ligands: PLC.14 33 PLIP interactions: 3 interactions with chain 6, 18 interactions with chain 7, 10 interactions with chain M, 2 interactions with chain L Hydrophobic interactions: 6:L.176, 6:I.181, 7:Y.39, 7:W.43, 7:W.43, 7:W.43, 7:W.43, 7:W.43, 7:W.43, 7:W.43, 7:V.46, 7:V.46, 7:L.50, 7:L.50, 7:L.50, 7:V.51, 7:Y.54, M:T.87, M:L.90, M:F.337, M:Y.375, M:I.456, M:I.458, M:I.463, L:F.21, L:F.21 Hydrogen bonds: 6:Y.169, 7:K.42, 7:W.43, M:Q.371, M:N.455 Salt bridges: 7:K.42, M:K.451 CDL.23: 32 residues within 4Å: Chain 1: P.37, A.40, L.41, P.45 Chain A: N.85, Y.86, F.88, T.89, I.90, L.92, L.93, I.97 Chain H: Y.332 Chain J: F.160, L.163, V.164, I.167 Chain N: I.3, L.112 Chain O: H.27, F.28, K.29, S.129, S.130, L.131, F.153, P.154, W.155, F.156, F.158, V.159, N.160 18 PLIP interactions: 6 interactions with chain O, 5 interactions with chain A, 3 interactions with chain J, 1 interactions with chain N, 2 interactions with chain 1, 1 interactions with chain H Hydrophobic interactions: O:F.153, O:W.155, A:Y.86, A:Y.86, A:F.88, A:T.89, A:L.92, J:F.160, J:L.163, J:V.164, N:I.3, 1:P.37, 1:L.41, H:Y.332 Hydrogen bonds: O:H.27, O:S.129, O:S.130 Salt bridges: O:K.29 CDL.31: 15 residues within 4Å: Chain 2: L.27, L.28, A.29, I.30 Chain I: Y.52 Chain Z: R.25, G.26, F.27, R.28, V.31, Y.32, A.34, A.35 Ligands: 3PE.11, CDL.33 11 PLIP interactions: 1 interactions with chain 2, 8 interactions with chain Z, 2 interactions with chain I Hydrophobic interactions: 2:L.28, Z:F.27, Z:V.31, Z:V.31, I:Y.52, I:Y.52 Hydrogen bonds: Z:G.26, Z:R.28 Salt bridges: Z:R.25, Z:R.25, Z:R.28 CDL.33: 19 residues within 4Å: Chain 0: A.1, I.2, F.4, L.7, L.8, G.11 Chain 2: S.17, W.21, L.24, R.25, L.28 Chain 5: S.2, S.4, L.5 Chain I: Y.52, L.55, E.56, F.59 Ligands: CDL.31 6 PLIP interactions: 1 interactions with chain 2, 4 interactions with chain I, 1 interactions with chain 0 Hydrophobic interactions: 2:L.28, I:L.55, I:F.59, I:F.59, I:F.59, 0:F.4 CDL.34: 19 residues within 4Å: Chain 1: N.5, G.7, F.8, W.9, Y.15, F.30 Chain A: V.103, N.107 Chain N: L.4, S.8, T.11, F.12, M.15 Chain O: K.73, V.77, M.80, L.81, A.84 Ligands: 3PE.35 8 PLIP interactions: 6 interactions with chain 1, 2 interactions with chain O Hydrophobic interactions: 1:W.9, 1:F.30, O:L.81 Hydrogen bonds: 1:N.5, 1:F.8, 1:W.9, 1:Y.15 Salt bridges: O:K.73

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.24: 29 residues within 4Å: Chain B: K.210 Chain P: F.39, G.40, N.42, G.43, F.44, L.45, R.65, E.66, M.87, L.89, L.108, I.109, G.110, R.111, E.112, F.118, V.123, V.146, A.148, F.149, F.159, K.163, P.182, A.183, P.184, M.185, D.190, K.191 17 PLIP interactions: 1 interactions with chain B, 16 interactions with chain P Salt bridges: B:K.210, P:R.65, P:R.111 Hydrophobic interactions: P:A.148, P:F.149 Hydrogen bonds: P:N.42, P:N.42, P:G.43, P:F.44, P:L.45, P:R.65, P:L.108, P:G.110, P:R.111, P:K.163, P:M.185 pi-Cation interactions: P:R.65

1 x ZN: ZINC ION(Non-covalent)

ZN.25: 5 residues within 4Å: Chain R: C.79, H.92, C.107, Y.109, C.110 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:C.79, R:H.92, R:C.107, R:C.110

2 x EHZ: ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate(Covalent)

EHZ.26: 26 residues within 4Å: Chain T: D.37, S.38, L.39 Chain W: Q.22, T.25, L.26, L.28, F.32, F.39, I.52, K.55, I.56, E.59, F.60, H.63, R.64, V.66, Q.72, L.75, Y.76, G.79, E.82, C.86, F.96, Y.99, F.100 16 PLIP interactions: 14 interactions with chain W, 2 interactions with chain T Hydrophobic interactions: W:L.26, W:F.32, W:F.32, W:I.56, W:E.59, W:F.60, W:F.60, W:Q.72, W:F.100 Hydrogen bonds: W:Q.22, W:Q.22, W:E.59, W:H.63, T:S.38, T:S.38 Salt bridges: W:R.64 EHZ.27: 26 residues within 4Å: Chain U: D.44, S.45, L.46 Chain d: P.6, F.7, N.11, K.12, V.15, S.22, L.25, A.26, W.29, K.39, I.43, K.46, F.47, N.50, A.51, I.53, L.59, T.62, L.63, T.66, H.69, L.70, F.73 12 PLIP interactions: 7 interactions with chain d, 5 interactions with chain U Hydrophobic interactions: d:K.39, d:F.47, d:A.51, d:L.59, d:T.66 Hydrogen bonds: d:A.51, U:D.44, U:D.44, U:S.45, U:S.45, U:S.45 Salt bridges: d:K.12

2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.28: 10 residues within 4Å: Chain Y: R.71, R.73, W.77, M.80, W.81, I.101, V.105 Ligands: 3PE.30 Chain c: L.57, V.61 3 PLIP interactions: 1 interactions with chain c, 2 interactions with chain Y Hydrophobic interactions: c:L.57 Hydrogen bonds: Y:W.81 Salt bridges: Y:R.71 LMT.29: 17 residues within 4Å: Chain M: F.177, L.180, S.181, V.184, L.206, I.209, I.210, L.212, G.213, I.216 Chain N: L.391, Y.396 Chain Y: A.127, H.142, T.144, F.145, W.146 8 PLIP interactions: 4 interactions with chain Y, 2 interactions with chain N, 2 interactions with chain M Hydrophobic interactions: Y:F.145, Y:W.146, N:Y.396, N:Y.396, M:L.180, M:I.209 Hydrogen bonds: Y:A.127, Y:W.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hameedi, M.A. et al., A conserved arginine residue is critical for stabilizing the N2 FeS cluster in mitochondrial complex I. J.Biol.Chem. (2021)

Release Date

2021-03-10

Peptides

NADH-ubiquinone oxidoreductase chain 3: A
Subunit NUKM of NADH:Ubiquinone Oxidoreductase (Complex I): B
NUGM protein: C
NUCM protein: D
Subunit NUHM of NADH:Ubiquinone Oxidoreductase (Complex I): E
Subunit NUBM of NADH:Ubiquinone Oxidoreductase (Complex I): F
Subunit NUAM of NADH:Ubiquinone Oxidoreductase (Complex I): G
NADH-ubiquinone oxidoreductase chain 1: H
Subunit NUIM of protein NADH:Ubiquinone Oxidoreductase (Complex I): I
NADH-ubiquinone oxidoreductase chain 6: J
NADH-ubiquinone oxidoreductase chain 4L: K
NADH-ubiquinone oxidoreductase chain 5: L
NADH-ubiquinone oxidoreductase chain 4: M
NADH dehydrogenase subunit 2: N
Subunit NUXM of NADH:Ubiquinone Oxidoreductase (Complex I): O
Epimerase domain-containing protein: P
Subunit NUYM of NADH:Ubiquinone Oxidoreductase (Complex I): Q
zf-CHCC domain-containing protein: R
Subunit NI8M of NADH:Ubiquinone Oxidoreductase (Complex I): S
Acyl carrier protein: T
Acyl carrier protein: U
Subunit NUFM of NADH:Ubiquinone Oxidoreductase (Complex I): V
Subunit NB4M of protein NADH:Ubiquinone Oxidoreductase (Complex I): W
Subunit NUPM of NADH:Ubiquinone Oxidoreductase (Complex I): X
Complex I-B14.7: Y
GRIM-19: Z
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1: 0
subunit NI9M of protein NADH:Ubiquinone Oxidoreductase (Complex I): 1
Subunit NUZM of NADH:Ubiquinone Oxidoreductase (Complex I): 2
subunit NEBM of protein NADH:Ubiquinone Oxidoreductase (Complex I) [Yarrowia lipolytica]: 3
Subunit NIPM of NADH:Ubiquinone Oxidoreductase (Complex I): 4
Subunit N7BM of NADH:Ubiquinone Oxidoreductase (Complex I): 5
Subunit NESM of NADH:Ubiquinone Oxidoreductase (Complex I): 6
subunit NUNM of protein NADH:Ubiquinone Oxidoreductase (Complex I): 7
Subunit NUUM of NADH:Ubiquinone Oxidoreductase (Complex I): 8
Subunit NUVM of NADH:Ubiquinone Oxidoreductase (Complex I): 9
Subunit NB2M of NADH:Ubiquinone Oxidoreductase (Complex I): a
Subunit NIAM of NADH:Ubiquinone Oxidoreductase (Complex I): b
Subunit NB5M of NADH:Ubiquinone Oxidoreductase (Complex I): c
Subunit NI2M of NADH:Ubiquinone Oxidoreductase (Complex I): d
Subunit NB8M of NADH:Ubiquinone Oxidoreductase (Complex I): e
Subunit NIDM of NADH:Ubiquinone Oxidoreductase (Complex I): f

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
a

1
b

2
c

3
d

4
e

5
f

6
g

7
h

8
i

9
j

a
k

b
l

c
m

d
n

e
o

f
p

Membrane

We predict this structure to be a membrane protein.
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NADH-ubiquinone oxidoreductase chain 3

Subunit NUKM of NADH:Ubiquinone Oxidoreductase (Complex I)

NUGM protein

NUCM protein

Subunit NUHM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUBM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUAM of NADH:Ubiquinone Oxidoreductase (Complex I)

NADH-ubiquinone oxidoreductase chain 1

Subunit NUIM of protein NADH:Ubiquinone Oxidoreductase (Complex I)

NADH-ubiquinone oxidoreductase chain 6

NADH-ubiquinone oxidoreductase chain 4L

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 4

NADH dehydrogenase subunit 2

Subunit NUXM of NADH:Ubiquinone Oxidoreductase (Complex I)

Epimerase domain-containing protein

Subunit NUYM of NADH:Ubiquinone Oxidoreductase (Complex I)

zf-CHCC domain-containing protein

Subunit NI8M of NADH:Ubiquinone Oxidoreductase (Complex I)

Acyl carrier protein

Acyl carrier protein

Subunit NUFM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB4M of protein NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUPM of NADH:Ubiquinone Oxidoreductase (Complex I)

Complex I-B14.7

GRIM-19

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1

subunit NI9M of protein NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUZM of NADH:Ubiquinone Oxidoreductase (Complex I)

subunit NEBM of protein NADH:Ubiquinone Oxidoreductase (Complex I) [Yarrowia lipolytica]

Subunit NIPM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit N7BM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NESM of NADH:Ubiquinone Oxidoreductase (Complex I)

subunit NUNM of protein NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUUM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NUVM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB2M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NIAM of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB5M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NI2M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NB8M of NADH:Ubiquinone Oxidoreductase (Complex I)

Subunit NIDM of NADH:Ubiquinone Oxidoreductase (Complex I)

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