SMTL ID : 3chx.1

Crystal structure of Methylosinus trichosporium OB3b particulate methane monooxygenase (pMMO)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.90 Å

Oligo State

hetero-3-3-3-3-3-mer

Ligands

9 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.1, H.105, H.107 Ligands: CU.2 No protein-ligand interaction detected (PLIP) CU.2: 5 residues within 4Å: Chain A: H.1, E.3, H.105, H.107 Ligands: CU.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.1 CU.3: 4 residues within 4Å: Chain B: E.200 Chain C: D.129, H.133, H.146 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.129, C:H.133 CU.4: 4 residues within 4Å: Chain F: H.1, H.105, H.107 Ligands: CU.5 No protein-ligand interaction detected (PLIP) CU.5: 5 residues within 4Å: Chain F: H.1, E.3, H.105, H.107 Ligands: CU.4 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:H.1 CU.6: 4 residues within 4Å: Chain G: E.200 Chain H: D.129, H.133, H.146 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:D.129, H:H.133 CU.7: 4 residues within 4Å: Chain K: H.1, H.105, H.107 Ligands: CU.8 No protein-ligand interaction detected (PLIP) CU.8: 5 residues within 4Å: Chain K: H.1, E.3, H.105, H.107 Ligands: CU.7 1 PLIP interactions: 1 interactions with chain K Metal complexes: K:H.1 CU.9: 4 residues within 4Å: Chain L: E.200 Chain M: D.129, H.133, H.146 2 PLIP interactions: 2 interactions with chain M Metal complexes: M:D.129, M:H.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hakemian, A.S. et al., The metal centers of particulate methane monooxygenase from Methylosinus trichosporium OB3b. Biochemistry (2008)

Release Date

2008-07-15

Peptides

PmoB: AFK
PmoA: BGL
PmoC: CHM
20-residue peptide: DIN
26-residue peptide: EJO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
E

K
I

B
B

G
F

L
J

C
C

H
G

M
K

D
D

I
H

N
L

E
M

J
N

O
O

Membrane

We predict this structure to be a membrane protein.
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PmoB

PmoA

PmoC

20-residue peptide

26-residue peptide

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