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SMTL ID : 6zkf.1

Complex I during turnover, open3

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)(Covalent)
1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
1 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
1 x K: POTASSIUM ION(Non-covalent)
14 x 3PE: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE(Non-covalent)
6 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
1 x DCQ: 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione(Non-covalent)
8 x CDL: CARDIOLIPIN(Non-covalent)
2 x ZMP: S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate(Covalent)(Non-covalent)
1 x ZN: ZINC ION(Non-covalent)
1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
1 x MYR: MYRISTIC ACID(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Kampjut, D. et al., The coupling mechanism of mammalian respiratory complex I. Science (2020)
Release Date
2020-10-14
Peptides
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial: A
Mitochondrial complex I, 24 kDa subunit: B
NADH:ubiquinone oxidoreductase core subunit S1: C
Mitochondrial complex I, 49 kDa subunit: D
NADH:ubiquinone oxidoreductase core subunit S3: E
Mitochondrial complex I, PSST subunit: F
Mitochondrial complex I, TYKY subunit: G
NADH-ubiquinone oxidoreductase chain 3: H
NADH-ubiquinone oxidoreductase chain 1: I
NADH-ubiquinone oxidoreductase chain 6: J
NADH-ubiquinone oxidoreductase chain 4L: K
NADH-ubiquinone oxidoreductase chain 5: L
NADH-ubiquinone oxidoreductase chain 4: M
NADH-ubiquinone oxidoreductase chain 2: N
Mitochondrial complex I, B14.7 subunit: O
NADH:ubiquinone oxidoreductase subunit B5: P
Acyl carrier protein: Q2
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8: R
Mitochondrial complex I, PDSW subunit: S
Mitochondrial complex I, 10 kDa subunit: T
Mitochondrial complex I, 13 kDa subunit: U
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial: V
NADH:ubiquinone oxidoreductase subunit A9: W
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2: X
Mitochondrial complex I, B13 subunit: Y
NADH:ubiquinone oxidoreductase subunit A6: Z
Mitochondrial complex I, B14.5a subunit: 0
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12: 1
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial: 3
NADH:ubiquinone oxidoreductase subunit S5: 4
NADH:ubiquinone oxidoreductase subunit A3: 5
NADH:ubiquinone oxidoreductase subunit B3: 6
NADH dehydrogenase [ubiquinone] 1 subunit C2: 7
NADH:ubiquinone oxidoreductase subunit B4: 8
Mitochondrial complex I, B16.6 subunit: 9
Mitochondrial complex I, B17 subunit: a
NADH:ubiquinone oxidoreductase subunit B7: b
NADH:ubiquinone oxidoreductase subunit B9: c
NADH:ubiquinone oxidoreductase subunit B2: d
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial: e
Mitochondrial complex I, ESSS subunit: f
Mitochondrial complex I, KFYI subunit: g
Mitochondrial complex I, MNLL subunit: h
Mitochondrial complex I, MWFE subunit: i
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
1
B
2
C
3
D
4
E
5
F
6
G
9
H
A
I
H
J
J
K
K
L
L
M
M
N
N
O
V
P
W
Q
X
2
j
R
Y
S
Z
T
a
U
b
V
c
W
d
X
e
Y
f
Z
g
0
h
1
i
3
k
4
l
5
m
6
n
7
o
8
p
9
q
a
r
b
s
c
t
d
u
e
v
f
w
g
x
h
y
i
z
Membrane
We predict this structure to be a membrane protein.

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

Mitochondrial complex I, 24 kDa subunit

NADH:ubiquinone oxidoreductase core subunit S1

Mitochondrial complex I, 49 kDa subunit

NADH:ubiquinone oxidoreductase core subunit S3

Mitochondrial complex I, PSST subunit

Mitochondrial complex I, TYKY subunit

NADH-ubiquinone oxidoreductase chain 3

NADH-ubiquinone oxidoreductase chain 1

NADH-ubiquinone oxidoreductase chain 6

NADH-ubiquinone oxidoreductase chain 4L

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 4

NADH-ubiquinone oxidoreductase chain 2

Mitochondrial complex I, B14.7 subunit

NADH:ubiquinone oxidoreductase subunit B5

Acyl carrier protein

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8

Mitochondrial complex I, PDSW subunit

Mitochondrial complex I, 10 kDa subunit

Mitochondrial complex I, 13 kDa subunit

NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

NADH:ubiquinone oxidoreductase subunit A9

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

Mitochondrial complex I, B13 subunit

NADH:ubiquinone oxidoreductase subunit A6

Mitochondrial complex I, B14.5a subunit

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial

NADH:ubiquinone oxidoreductase subunit S5

NADH:ubiquinone oxidoreductase subunit A3

NADH:ubiquinone oxidoreductase subunit B3

NADH dehydrogenase [ubiquinone] 1 subunit C2

NADH:ubiquinone oxidoreductase subunit B4

Mitochondrial complex I, B16.6 subunit

Mitochondrial complex I, B17 subunit

NADH:ubiquinone oxidoreductase subunit B7

NADH:ubiquinone oxidoreductase subunit B9

NADH:ubiquinone oxidoreductase subunit B2

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial

Mitochondrial complex I, ESSS subunit

Mitochondrial complex I, KFYI subunit

Mitochondrial complex I, MNLL subunit

Mitochondrial complex I, MWFE subunit

Related Entries With Identical Sequence

5ldw.1 | 5ldx.1 | 5lnk.1 | 5o31.1 | 6q9b.1 | 6q9d.1 | 6qa9.1 | 6qbx.36 | 6qbx.39 | 6qbx.40 | 6qbx.41 | 6qbx.42 | 6qbx.43 | 6qbx.44 | 6qbx.45 | 6qbx.50 | 6qbx.65 | 6qc2.1 | 6qc2.2 | 6qc2.3 | 6qc2.4 | 6qc2.5 | 6qc2.6 | 6qc2.7 | 6qc2.12 | 6qc2.28 | 6qc2.64 | 6qc3.36 | 6qc3.38 | 6qc3.39  more...