SMTL ID : 7zd6.1

Complex I from Ovis aries, at pH7.4, Open state

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
6 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
14 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)
1 x DCQ: 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione(Non-covalent)
2 x ZMP: S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate(Covalent)
1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
1 x MYR: MYRISTIC ACID(Covalent)
6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
1 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
1 x K: POTASSIUM ION(Non-covalent)
1 x ZN: ZINC ION(Non-covalent)
1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Kravchuk, V. et al., A universal coupling mechanism of respiratory complex I. Nature (2022)
Release Date
2022-09-21
Peptides
NADH-ubiquinone oxidoreductase chain 3: A
NADH-ubiquinone oxidoreductase chain 1: B
NADH-ubiquinone oxidoreductase chain 6: C
NADH-ubiquinone oxidoreductase chain 4L: D
NADH-ubiquinone oxidoreductase chain 5: E
NADH-ubiquinone oxidoreductase chain 4: F
NADH-ubiquinone oxidoreductase chain 2: G
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11: H
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial: I
Acyl carrier protein: Ji
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8: K
Complex I-PDSW: L
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial: M
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5: N
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3: O
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3: P
NADH dehydrogenase [ubiquinone] 1 subunit C2: Q
NADH:ubiquinone oxidoreductase subunit B4: R
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13: S
Mitochondrial complex I, B17 subunit: T
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7: U
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9: V
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial: W
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial: X
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial: Y
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial: Z
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1: 0
Complex I-MWFE: 1
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial: 2
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial: 3
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial: 4
Complex I-49kD: 5
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial: 6
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial: 7
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial: 8
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial: 9
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial: a
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial: b
NADH:ubiquinone oxidoreductase subunit A9: c
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2: d
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5: e
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6: f
Mitochondrial complex I, B14.5a subunit: g
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12: h
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
H
C
J
D
K
E
L
F
M
G
N
H
V
I
W
J
X
i
j
K
Y
L
Z
M
k
N
l
O
m
P
n
Q
o
R
p
S
q
T
r
U
s
V
t
W
u
X
v
Y
w
Z
x
0
y
1
z
2
1
3
2
4
3
5
4
6
5
7
6
8
9
9
a
a
b
b
c
c
d
d
e
e
f
f
g
g
h
h
i
Membrane
We predict this structure to be a membrane protein.

NADH-ubiquinone oxidoreductase chain 3

NADH-ubiquinone oxidoreductase chain 1

NADH-ubiquinone oxidoreductase chain 6

NADH-ubiquinone oxidoreductase chain 4L

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 4

NADH-ubiquinone oxidoreductase chain 2

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial

Acyl carrier protein

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8

Complex I-PDSW

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 5

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 subunit C2

NADH:ubiquinone oxidoreductase subunit B4

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13

Mitochondrial complex I, B17 subunit

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial

NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1

Complex I-MWFE

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial

NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial

Complex I-49kD

NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

NADH:ubiquinone oxidoreductase subunit A9

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

Mitochondrial complex I, B14.5a subunit

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12

Related Entries With Identical Sequence

5lc5.1 | 5ldw.1 | 5ldx.1 | 5lnk.1 | 5o31.1 | 6q9b.1 | 6q9d.1 | 6qa9.1 | 6qc2.1 | 6qc2.2 | 6qc2.3 | 6qc2.4 | 6qc2.5 | 6qc2.6 | 6qc2.7 | 6qc2.8 | 6qc2.11 | 6qc2.13 | 6qc2.14 | 6qc2.17 | 6qc2.18 | 6qc2.26 | 6qc2.28 | 6qc2.55 | 6qc2.64 | 6qc5.1 | 6qc6.1 | 6qc7.1 | 6qc8.1 | 6qc9.1  more...