SMTL ID : 6zo6.1

Minocycline binding to the deep binding pocket of AcrB-G619P

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.35 Å
Oligo State
hetero-3-2-mer
Ligands
6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
3 x OCT: N-OCTANE(Non-covalent)
5 x DDQ: DECYLAMINE-N,N-DIMETHYL-N-OXIDE(Non-covalent)
14 x GOL: GLYCEROL(Non-functional Binders)
3 x D12: DODECANE(Non-covalent)
6 x HEX: HEXANE(Non-covalent)(Non-functional Binders)
24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
1 x MIY: (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE(Non-covalent)
1 x DDR: (2S)-3-hydroxypropane-1,2-diyl didecanoate(Non-covalent)
5 x D10: DECANE(Non-covalent)
3 x CL: CHLORIDE ION(Non-functional Binders)
2 x MYS: PENTADECANE(Non-covalent)
1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
1 x 8K6: Octadecane(Non-covalent)
1 x R16: HEXADECANE(Non-covalent)
1 x SO4: SULFATE ION(Non-functional Binders)
1 x C14: TETRADECANE(Non-covalent)
1 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)
1 x LPX: (2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate(Non-covalent)
1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Tam, H.K. et al., Allosteric drug transport mechanism of multidrug transporter AcrB. Nat Commun (2021)
Release Date
2021-05-19
Peptides
Multidrug efflux pump subunit AcrB: ABC
DARPIN: DE
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
Membrane
We predict this structure to be a membrane protein.

Multidrug efflux pump subunit AcrB

DARPIN

Related Entries With Identical Sequence

2j8s.1 | 4c48.1 | 4dx5.1 | 4dx6.1 | 4dx7.1 | 4u8v.1 | 4u8y.1 | 4u95.1 | 4u96.1 | 5en5.1 | 5eno.1 | 5enp.1 | 5enq.1 | 5enr.1 | 5ens.1 | 5ent.1 | 5jmn.1 | 5nc5.1 | 6q4n.1 | 6q4o.1 | 6q4p.1 | 6sgr.1 | 6sgs.1 | 6sgt.1 | 6sgu.1 | 6zo5.1 | 6zo7.1 | 6zo8.1 | 6zo9.1 | 6zoa.1  more...