SMTL ID : 7aax.1

Crystal structure of MerTK kinase domain in complex with LDC1267

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x R6H: ~{N}-[4-(6,7-dimethoxyquinolin-4-yl)oxy-3-fluoranyl-phenyl]-4-ethoxy-1-(4-fluoranyl-2-methyl-phenyl)pyrazole-3-carboxamide(Non-covalent)

R6H.1: 19 residues within 4Å: Chain A: L.27, V.35, A.51, K.53, F.68, M.75, I.84, L.86, V.103, L.105, P.106, F.107, M.108, K.109, H.155, M.164, A.174, D.175, F.176 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.35, A:K.53, A:F.68, A:L.86, A:V.103, A:L.105, A:F.107, A:F.176 Hydrogen bonds: A:M.108, A:D.175

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: Y.235, P.236, L.253, K.254 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: R.121, M.232 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: R.18, L.21, I.22, L.23 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pflug, A. et al., A-loop interactions in Mer tyrosine kinase give rise to inhibitors with two-step mechanism and long residence time of binding. Biochem.J. (2020)

Release Date

2020-10-28

Peptides

Tyrosine-protein kinase Mer: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase Mer

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