SMTL ID : 7arj.1

LolCDE in complex with lipoprotein and AMPPNP complex undimerized form

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-2-1-mer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 10 residues within 4Å: Chain C: Y.15, S.43, S.44, G.45, S.46, G.47, K.48, S.49, T.50 Ligands: MG.2 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:S.44, C:S.46, C:K.48, C:K.48, C:S.49, C:S.49, C:T.50, C:T.50, C:T.50 ANP.3: 13 residues within 4Å: Chain D: Y.15, T.22, V.24, S.43, S.44, G.45, S.46, G.47, K.48, S.49, T.50, E.171 Ligands: MG.4 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:S.44, D:G.45, D:S.46, D:G.47, D:K.48, D:S.49, D:S.49, D:T.50, D:T.50, D:T.50, D:E.171

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain C: S.49, D.170 Ligands: ANP.1 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.170, C:D.170 MG.4: 3 residues within 4Å: Chain D: S.49, D.170 Ligands: ANP.3 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.170

1 x Z41: (2S)-3-hydroxypropane-1,2-diyl dihexadecanoate(Covalent)

Z41.5: 15 residues within 4Å: Chain A: T.43, V.44, V.47, M.48, F.51, E.263, M.266, M.267, L.269, L.270 Chain B: M.267, I.271 Chain E: C.1, S.2 Ligands: PLM.6 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.47, A:F.51, A:E.263, A:L.269, A:L.270, B:I.271, B:I.271

1 x PLM: PALMITIC ACID(Covalent)

PLM.6: 9 residues within 4Å: Chain B: V.43, A.47, M.48, F.51, Y.366, F.367, L.371 Chain E: C.1 Ligands: Z41.5 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:A.47, B:F.51, B:Y.366, B:F.367, B:L.371

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tang, X. et al., Structural basis for bacterial lipoprotein relocation by the transporter LolCDE. Nat.Struct.Mol.Biol. (2021)

Release Date

2021-04-07

Peptides

Lipoprotein-releasing ABC transporter permease subunit LolC: A
Lipoprotein-releasing system transmembrane protein LolE: B
Lipoprotein-releasing system ATP-binding protein LolD: CD
LPP: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
E

C
F

D
D

E
V

Membrane

We predict this structure to be a membrane protein.
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Lipoprotein-releasing ABC transporter permease subunit LolC

Lipoprotein-releasing system transmembrane protein LolE

Lipoprotein-releasing system ATP-binding protein LolD

LPP

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