SMTL ID : 7ark.1

LolCDE in complex with AMP-PNP in the closed NBD state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-2-mer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 17 residues within 4Å: Chain C: Y.15, E.17, T.22, S.43, G.45, S.46, G.47, K.48, S.49, T.50, Q.94 Chain D: R.138, E.145, S.147, G.148, G.149 Ligands: MG.2 16 PLIP interactions: 11 interactions with chain C, 5 interactions with chain D Hydrogen bonds: C:T.22, C:G.45, C:S.46, C:K.48, C:K.48, C:K.48, C:S.49, C:S.49, C:S.49, C:T.50, C:T.50, D:R.138, D:R.138, D:S.147, D:G.148, D:G.149 ANP.3: 17 residues within 4Å: Chain B: A.408 Chain C: R.138, E.145, L.146, S.147, G.148 Chain D: K.13, Y.15, E.17, V.24, G.45, S.46, G.47, K.48, S.49, T.50 Ligands: MG.4 14 PLIP interactions: 5 interactions with chain C, 9 interactions with chain D Hydrogen bonds: C:R.138, C:R.138, C:E.145, C:L.146, C:G.148, D:G.45, D:S.46, D:G.47, D:K.48, D:S.49, D:S.49, D:S.49 pi-Stacking: D:Y.15, D:Y.15

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain C: Q.94, D.170 Ligands: ANP.1 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain D: Q.94, D.170 Ligands: ANP.3 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tang, X. et al., Structural basis for bacterial lipoprotein relocation by the transporter LolCDE. Nat.Struct.Mol.Biol. (2021)

Release Date

2021-04-07

Peptides

Lipoprotein-releasing ABC transporter permease subunit LolC: A
Lipoprotein-releasing system transmembrane protein LolE: B
Lipoprotein-releasing system ATP-binding protein LolD: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
E

C
D

D
F

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Lipoprotein-releasing ABC transporter permease subunit LolC

Lipoprotein-releasing system transmembrane protein LolE

Lipoprotein-releasing system ATP-binding protein LolD

Related Entries With Identical Sequence