SMTL ID : 7v8l.1

LolCDE with bound RcsF in nanodiscs

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-2-mer

Ligands

1 x PCJ: (2R)-3-{[(2S)-3-HYDROXY-2-(PALMITOYLAMINO)PROPYL]THIO}PROPANE-1,2-DIYL DIHEXADECANOATE(Non-covalent)

PCJ.1: 40 residues within 4Å: Chain A: V.40, V.43, G.44, A.47, M.48, F.51, Y.260, M.261, D.264, I.265, M.267, I.268, I.271, M.272, L.278, I.349, F.360, L.361, Y.366, F.367, L.371 Chain B: S.1, M.2, L.3 Chain C: M.39, A.40, T.43, V.44, V.47, M.48, F.51, E.263, M.266, M.267, L.269, L.270, L.273, L.336, L.340, L.356 23 PLIP interactions: 5 interactions with chain B, 8 interactions with chain C, 10 interactions with chain A Hydrophobic interactions: B:L.3, C:A.40, C:T.43, C:V.47, C:L.269, C:L.270, C:L.273, C:L.340, A:V.40, A:A.47, A:I.265, A:I.268, A:I.271, A:F.360, A:F.360, A:Y.366, A:F.367 Hydrogen bonds: B:S.1, B:S.1, B:M.2, B:L.3, C:E.263, A:D.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bei, W. et al., Cryo-EM structures of LolCDE reveal the molecular mechanism of bacterial lipoprotein sorting in Escherichia coli. Plos Biol. (2022)

Release Date

2022-09-21

Peptides

Lipoprotein-releasing system transmembrane protein LolE: A
Outer membrane lipoprotein RcsF: B
Lipoprotein-releasing system transmembrane protein LolC: C
Lipoprotein-releasing system ATP-binding protein LolD: DE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
A

C
C

D
D

E
F

Membrane

We predict this structure to be a membrane protein.
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Lipoprotein-releasing system transmembrane protein LolE

Outer membrane lipoprotein RcsF

Lipoprotein-releasing system transmembrane protein LolC

Lipoprotein-releasing system ATP-binding protein LolD

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