SMTL ID : 7b7q.1

CooS-V with oxidized hybrid cluster

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-dimer

Ligands

1 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.1: 12 residues within 4Å: Chain A: C.38, Y.40, C.41, S.46, Q.48, R.56 Chain B: C.38, Y.40, C.41, S.46, Q.48, R.56 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B, Metal complexes: A:C.38, A:C.41, B:C.38, B:C.41

2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.2: 15 residues within 4Å: Chain A: C.47, Q.48, L.49, C.50, N.52, G.53, P.54, C.55, G.66, V.67, C.68, I.70, M.75, R.78, T.196 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.47, A:C.50, A:C.55, A:C.68 SF4.6: 14 residues within 4Å: Chain B: C.47, L.49, C.50, N.52, G.53, P.54, C.55, G.66, V.67, C.68, I.70, M.75, R.78, T.196 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.47, B:C.50, B:C.55, B:C.68

2 x T2N: 3,5-dioxa-7-thia-1-thionia-2$l^{2},4$l^{2},6$l^{3},8$l^{2}-tetraferrabicyclo[4.2.0]octane(Non-covalent)

T2N.3: 15 residues within 4Å: Chain A: H.259, I.294, E.295, W.317, N.337, C.338, N.448, C.449, T.450, G.479, C.480, C.521, M.555, E.556, K.558 8 PLIP interactions: 7 interactions with chain A, 1 Ligand-Water interactions, Hydrogen bonds: A:C.480 Salt bridges: A:E.556 Metal complexes: A:C.338, A:C.449, A:C.480, A:E.556, A:E.556, H2O.1 T2N.7: 15 residues within 4Å: Chain B: H.259, I.294, E.295, W.317, N.337, C.338, N.448, C.449, T.450, G.479, C.480, C.521, M.555, E.556, K.558 9 PLIP interactions: 8 interactions with chain B, 1 Ligand-Water interactions Hydrogen bonds: B:C.480 Water bridges: B:H.259 Salt bridges: B:E.556 Metal complexes: B:C.338, B:C.449, B:C.480, B:E.556, B:E.556, H2O.27

1 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)

TAM.4: 5 residues within 4Å: Chain A: D.578, M.582, V.605, G.606, S.607 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.578 Water bridges: A:D.578, A:D.578

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 8 residues within 4Å: Chain A: L.424, P.430, V.434, K.439, E.505, V.506, N.509, L.510 No protein-ligand interaction detected (PLIP) PEG.8: 9 residues within 4Å: Chain B: L.424, P.430, E.433, V.434, K.439, E.505, V.506, N.509, L.510 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.433, B:K.439, B:E.505, B:E.505

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeoung, J.H. et al., A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold. Angew.Chem.Int.Ed.Engl. (2022)

Release Date

2022-01-12

Peptides

Carbon monoxide dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Carbon monoxide dehydrogenase

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