- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x SF3: FE4-S3 CLUSTER(Non-covalent)
SF3.3: 15 residues within 4Å:- Chain A: H.259, I.294, E.295, W.317, N.337, C.338, N.448, C.449, T.450, G.479, C.480, C.521, M.555, E.556, K.558
11 PLIP interactions:10 interactions with chain A, 1 Ligand-Water interactions,- Salt bridges: A:E.295, A:E.556, A:E.556
- Metal complexes: A:H.259, A:E.295, A:C.338, A:C.449, A:C.480, A:C.521, A:E.556, H2O.1
SF3.15: 13 residues within 4Å:- Chain B: H.259, I.294, E.295, W.317, N.337, C.338, C.449, T.450, G.479, C.480, C.521, E.556, K.558
11 PLIP interactions:10 interactions with chain B, 1 Ligand-Water interactions- Salt bridges: B:E.295, B:E.556, B:E.556
- Metal complexes: B:H.259, B:E.295, B:C.338, B:C.449, B:C.480, B:C.521, B:E.556, H2O.21
- 9 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)
BU3.4: 7 residues within 4Å:- Chain A: N.39, Y.40, L.43, V.45, I.57, N.58, K.60
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Y.40
- Hydrogen bonds: A:N.39
- Water bridges: A:N.58, A:N.58
BU3.5: 8 residues within 4Å:- Chain A: L.176, I.178, V.203, T.207, L.210, L.590, L.595, I.598
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:V.203, A:I.598
- Water bridges: A:L.176
BU3.9: 3 residues within 4Å:- Chain A: G.455, P.456, Y.459
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:P.456
BU3.10: 5 residues within 4Å:- Chain A: K.436, L.538, L.627, G.628, I.629
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:K.436, A:I.629
- Hydrogen bonds: A:K.436, A:L.627
BU3.11: 5 residues within 4Å:- Chain A: Q.122, D.126, V.163, Y.164, L.529
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:Y.164
BU3.12: 9 residues within 4Å:- Chain A: R.169, V.172, D.541, A.543, P.596, S.597, I.598, T.599, G.600
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.172, A:A.543
- Hydrogen bonds: A:R.169, A:P.596
BU3.16: 7 residues within 4Å:- Chain A: R.56
- Chain B: R.37, C.38, N.39, Y.40, R.56
- Ligands: BU3.17
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Water bridges: A:R.56
- Hydrophobic interactions: B:N.39, B:Y.40
- Hydrogen bonds: B:N.39
BU3.17: 7 residues within 4Å:- Chain B: N.39, Y.40, L.43, V.45, N.58
- Ligands: BU3.16, PEG.21
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:Y.40
- Hydrogen bonds: B:N.39
- Water bridges: B:N.58, B:N.58
BU3.23: 8 residues within 4Å:- Chain B: P.417, I.420, L.421, L.424, I.428, L.529, V.530, A.533
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:I.428
- Water bridges: B:P.417, B:A.533
- 7 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.6: 13 residues within 4Å:- Chain A: M.80, R.83, N.84, Y.554, M.555, Q.557, T.560, P.579, P.580
- Chain B: Q.48, L.49, C.50, S.51
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.83, A:N.84, A:Q.557, B:C.50
PEG.7: 7 residues within 4Å:- Chain A: N.109, T.110, P.111, S.375, E.376, R.378, E.379
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:E.379
- Water bridges: A:N.109, A:N.109, A:E.376, A:R.378, A:R.378
PEG.8: 6 residues within 4Å:- Chain A: P.341, N.342, G.344, P.345, P.364
- Chain B: N.71
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:P.341
- Water bridges: B:N.71, B:N.71, B:N.71
PEG.19: 12 residues within 4Å:- Chain A: C.50
- Chain B: M.80, R.83, N.84, Y.554, M.555, E.556, Q.557, T.560, L.564, P.579, P.580
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.83, B:R.83, B:N.84, B:Y.554, B:Q.557
PEG.20: 8 residues within 4Å:- Chain A: L.65, N.71
- Chain B: Q.22, L.23, S.24, N.342, P.345, L.346
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.24, B:N.342
- Water bridges: B:N.342
PEG.21: 4 residues within 4Å:- Chain B: N.39, E.42, L.43
- Ligands: BU3.17
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.39, B:N.39
PEG.22: 2 residues within 4Å:- Chain A: V.61
- Chain B: K.35
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.35
- 2 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)
TAM.13: 5 residues within 4Å:- Chain A: D.578, M.582, V.605, G.606, S.607
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:V.605
- Hydrogen bonds: A:D.578, A:G.606
- Water bridges: A:D.578, A:S.607
TAM.18: 5 residues within 4Å:- Chain B: D.578, M.582, V.605, G.606, S.607
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:V.605
- Hydrogen bonds: B:D.578, B:D.578, B:G.606
- Water bridges: B:D.578, B:D.578, B:S.607
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jeoung, J.H. et al., A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold. Angew.Chem.Int.Ed.Engl. (2022)
- Release Date
- 2022-01-12
- Peptides
- Carbon monoxide dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x SF3: FE4-S3 CLUSTER(Non-covalent)
- 9 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)
- 7 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jeoung, J.H. et al., A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold. Angew.Chem.Int.Ed.Engl. (2022)
- Release Date
- 2022-01-12
- Peptides
- Carbon monoxide dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B