SMTL ID : 7b7t.1

CooS-V with oxidized hybrid cluster

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

homo-dimer

Ligands

1 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.1: 12 residues within 4Å: Chain A: C.38, Y.40, C.41, S.46, Q.48, R.56 Chain B: C.38, Y.40, C.41, S.46, Q.48, R.56 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B, Metal complexes: A:C.38, A:C.41, B:C.38, B:C.41

2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.2: 15 residues within 4Å: Chain A: C.47, Q.48, L.49, C.50, N.52, G.53, P.54, C.55, G.66, V.67, C.68, I.70, M.75, R.78, T.196 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.47, A:C.50, A:C.55, A:C.68 SF4.6: 15 residues within 4Å: Chain B: C.47, Q.48, L.49, C.50, N.52, G.53, P.54, C.55, G.66, V.67, C.68, I.70, M.75, R.78, T.196 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.47, B:C.50, B:C.55, B:C.68

2 x SF3: FE4-S3 CLUSTER(Non-covalent)

SF3.3: 15 residues within 4Å: Chain A: H.259, I.294, E.295, W.317, N.337, C.338, N.448, C.449, T.450, G.479, C.480, C.521, M.555, E.556, K.558 11 PLIP interactions: 10 interactions with chain A, 1 Ligand-Water interactions, Salt bridges: A:E.295, A:E.556, A:E.556 Metal complexes: A:H.259, A:E.295, A:C.338, A:C.449, A:C.480, A:C.521, A:E.556, H2O.1 SF3.7: 14 residues within 4Å: Chain B: H.259, I.294, E.295, W.317, N.337, C.338, C.449, T.450, G.479, C.480, C.521, M.555, E.556, K.558 10 PLIP interactions: 10 interactions with chain B, Salt bridges: B:E.295, B:E.556, B:E.556 Metal complexes: B:H.259, B:E.295, B:C.338, B:C.449, B:C.480, B:C.521, B:E.556

1 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)

BU3.4: 4 residues within 4Å: Chain A: E.433, K.436, A.437, I.629 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.437 Water bridges: A:A.437

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 9 residues within 4Å: Chain A: L.424, P.430, E.433, V.434, K.439, E.505, V.506, N.509, L.510 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.430, A:K.439 Water bridges: A:E.505, A:N.509 PEG.8: 9 residues within 4Å: Chain B: L.424, P.430, L.431, V.434, K.439, E.505, V.506, N.509, L.510 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.505

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeoung, J.H. et al., A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold. Angew.Chem.Int.Ed.Engl. (2022)

Release Date

2022-01-12

Peptides

Carbon monoxide dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Carbon monoxide dehydrogenase

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