SMTL ID : 7dcz.1

Crystal Structure of BACE1 in complex with N-{3-[(4S)-2-amino-4-methyl-4H-1,3-thiazin-4-yl]-4- fluorophenyl}-5-cyanopyridine-2-carboxamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: E.127, S.128 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: R.372 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: H.68, K.130 Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain A: K.261 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: R.73, Y.74, Q.76 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.74, A:Y.74

1 x H3C: N-[3-[(4S)-2-azanyl-4-methyl-1,3-thiazin-4-yl]-4-fluoranyl-phenyl]-5-cyano-pyridine-2-carboxamide(Non-covalent)

H3C.6: 17 residues within 4Å: Chain A: G.34, Q.35, G.36, L.53, D.55, G.57, S.58, Y.94, F.131, I.133, I.141, D.251, S.252, G.253, T.254, T.255, A.358 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.131, A:I.141 Hydrogen bonds: A:D.55, A:G.253 Water bridges: A:G.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koriyama, Y. et al., Discovery of Atabecestat (JNJ-54861911): A Thiazine-Based beta-Amyloid Precursor Protein Cleaving Enzyme 1 Inhibitor Advanced to the Phase 2b/3 EARLY Clinical Trial. J.Med.Chem. (2021)

Release Date

2021-03-10

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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