SMTL ID : 7dhs.1

Crystal Structure Analysis of the BRD4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

2 x H8C: 6-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(1R)-1-phenylethyl]benzo[cd]indol-2-one(Non-covalent)

H8C.1: 12 residues within 4Å: Chain A: W.54, P.55, F.56, V.60, L.65, L.67, Y.70, Y.112, N.113, D.118, I.119, M.122 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.54, A:W.54, A:P.55, A:F.56, A:L.65, A:L.65, A:L.67, A:Y.112, A:D.118, A:I.119 Hydrogen bonds: A:N.113 Water bridges: A:C.109 H8C.2: 13 residues within 4Å: Chain B: W.54, P.55, F.56, V.60, L.65, L.67, Y.70, C.109, Y.112, N.113, D.118, I.119, M.122 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:W.54, B:F.56, B:L.65, B:L.67, B:Y.112, B:D.118, B:I.119 Hydrogen bonds: B:N.113 Water bridges: B:C.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, T.B. et al., Y06014 is a selective BET inhibitor for the treatment of prostate cancer. Acta Pharmacol.Sin. (2021)

Release Date

2021-09-15

Peptides

Bromodomain-containing protein 4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bromodomain-containing protein 4

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