SMTL ID : 7eai.3 (3 other biounits)

Echovirus3 empty compacted particle

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-mer

Ligands

6 x SPH: SPHINGOSINE(Covalent)

SPH.1: 14 residues within 4Å: Chain A: I.95, N.96, T.97, R.98, F.115, M.117, I.119, Y.146, M.181, V.183, Y.192, N.214, M.216, I.219 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.95, A:I.95, A:T.97, A:F.115, A:I.119, A:I.119, A:Y.146, A:Y.146, A:Y.146, A:Y.146, A:V.183, A:Y.192, A:I.219 Hydrogen bonds: A:T.97, A:T.97, A:R.98 SPH.2: 14 residues within 4Å: Chain D: I.95, N.96, T.97, R.98, F.115, M.117, I.119, Y.146, M.181, V.183, Y.192, N.214, M.216, I.219 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:I.95, D:I.95, D:T.97, D:F.115, D:I.119, D:I.119, D:Y.146, D:Y.146, D:Y.146, D:Y.146, D:V.183, D:Y.192, D:I.219 Hydrogen bonds: D:T.97, D:T.97, D:R.98 SPH.3: 14 residues within 4Å: Chain G: I.95, N.96, T.97, R.98, F.115, M.117, I.119, Y.146, M.181, V.183, Y.192, N.214, M.216, I.219 16 PLIP interactions: 16 interactions with chain G Hydrophobic interactions: G:I.95, G:I.95, G:T.97, G:F.115, G:I.119, G:I.119, G:Y.146, G:Y.146, G:Y.146, G:Y.146, G:V.183, G:Y.192, G:I.219 Hydrogen bonds: G:T.97, G:T.97, G:R.98 SPH.4: 14 residues within 4Å: Chain J: I.95, N.96, T.97, R.98, F.115, M.117, I.119, Y.146, M.181, V.183, Y.192, N.214, M.216, I.219 16 PLIP interactions: 16 interactions with chain J Hydrophobic interactions: J:I.95, J:I.95, J:T.97, J:F.115, J:I.119, J:I.119, J:Y.146, J:Y.146, J:Y.146, J:Y.146, J:V.183, J:Y.192, J:I.219 Hydrogen bonds: J:T.97, J:T.97, J:R.98 SPH.5: 14 residues within 4Å: Chain M: I.95, N.96, T.97, R.98, F.115, M.117, I.119, Y.146, M.181, V.183, Y.192, N.214, M.216, I.219 16 PLIP interactions: 16 interactions with chain M Hydrophobic interactions: M:I.95, M:I.95, M:T.97, M:F.115, M:I.119, M:I.119, M:Y.146, M:Y.146, M:Y.146, M:Y.146, M:V.183, M:Y.192, M:I.219 Hydrogen bonds: M:T.97, M:T.97, M:R.98 SPH.6: 14 residues within 4Å: Chain P: I.95, N.96, T.97, R.98, F.115, M.117, I.119, Y.146, M.181, V.183, Y.192, N.214, M.216, I.219 16 PLIP interactions: 16 interactions with chain P Hydrophobic interactions: P:I.95, P:I.95, P:T.97, P:F.115, P:I.119, P:I.119, P:Y.146, P:Y.146, P:Y.146, P:Y.146, P:V.183, P:Y.192, P:I.219 Hydrogen bonds: P:T.97, P:T.97, P:R.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, R. et al., Structural basis for neutralization of an anicteric hepatitis associated echovirus by a potent neutralizing antibody. Cell Discov (2021)

Release Date

2021-07-14

Peptides

Capsid protein VP1: ADGJMP
Capsid protein VP0: BEHKNQ
Capsid protein VP3: CFILOR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

J
A

M
A

P
A

B
B

E
B

H
B

K
B

N
B

Q
B

C
C

F
C

I
C

L
C

O
C

R
C

Capsid protein VP1

Capsid protein VP0

Capsid protein VP3

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