SMTL ID : 7eak.1 (3 other biounits)

Echovirus3 full particle in complex with 5G3 fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x SPH: SPHINGOSINE(Covalent)

SPH.1: 15 residues within 4Å: Chain A: I.95, T.97, M.117, I.119, I.144, M.145, Y.146, P.168, S.169, I.170, M.181, V.183, I.186, Y.192, M.216 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.95, A:I.144, A:Y.146, A:Y.146, A:I.170, A:V.183, A:V.183, A:I.186

1 x MYR: MYRISTIC ACID(Covalent)

MYR.2: 3 residues within 4Å: Chain D: G.1, A.2, Y.31 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:Y.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, R. et al., Structural basis for neutralization of an anicteric hepatitis associated echovirus by a potent neutralizing antibody. Cell Discov (2021)

Release Date

2021-07-14

Peptides

Capsid protein VP1: A
Capsid protein VP2: B
Capsid protein VP3: C
Capsid protein VP4: D
heavy chain of 5G3 fab: E
light chain of 5G3 fab: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
F

F
L

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

Capsid protein VP4

heavy chain of 5G3 fab

light chain of 5G3 fab

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