SMTL ID : 8gsd.4 (3 other biounits)

Echovirus3 full particle in complex with 6D10 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 14 residues within 4Å: Chain C: I.95, T.97, R.98, I.119, I.144, Y.146, M.181, V.183, I.186, Y.192, S.193, N.194, M.216, F.240 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:I.95, C:T.97, C:I.119, C:I.144, C:Y.146, C:V.183, C:V.183, C:I.186, C:F.240 Hydrogen bonds: C:S.193, C:N.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qi, S. et al., Structural Basis for the Immunogenicity of the C-Terminus of VP1 of Echovirus 3 Revealed by the Binding of a Neutralizing Antibody. Viruses (2022)

Release Date

2022-12-14

Peptides

Heavy chain of 6D10: A
Light chain of 6D10: B
Genome polyprotein (Fragment): C
Genome polyprotein: D
Genome polyprotein: E
Genome polyprotein (Fragment): F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
1

D
2

E
3

F
4

Heavy chain of 6D10

Light chain of 6D10

Genome polyprotein (Fragment)

Genome polyprotein

Genome polyprotein

Genome polyprotein (Fragment)

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