SMTL ID : 7fxu.1

Crystal Structure of human FABP4 in complex with 2-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-4,5-dimethylthiophen-2-yl]carbamoyl]cyclopentene-1-carboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

1 x U6O: 2-{[(3M)-3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-4,5-dimethylthiophen-2-yl]carbamoyl}cyclopent-1-ene-1-carboxylic acid(Non-covalent)

U6O.1: 15 residues within 4Å: Chain A: F.20, Y.23, M.24, V.29, A.37, A.40, P.42, S.59, F.61, A.79, D.80, R.82, C.121, R.130, Y.132 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.20, A:F.20, A:Y.23, A:V.29, A:A.37, A:A.40, A:F.61, A:F.61, A:A.79 Hydrogen bonds: A:R.130 Water bridges: A:S.57, A:S.57, A:R.110, A:Y.132 Salt bridges: A:R.130

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: E.65, I.66, E.76, V.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.65, A:V.77

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 6 residues within 4Å: Chain A: I.55, S.57, T.64, I.66, E.76, R.110 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.64

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.112, D.115, R.134 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.112, A:R.112 Salt bridges: A:R.112, A:R.134 SO4.5: 5 residues within 4Å: Chain A: S.17, E.18, N.19, F.20, D.21 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.19, A:F.20, A:D.21 Water bridges: A:D.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Obst, U. et al., Crystal Structure of a human FABP4 complex. To be published

Release Date

2023-06-14

Peptides

Fatty acid-binding protein, adipocyte: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fatty acid-binding protein, adipocyte

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