SMTL ID : 7g0e.1

Crystal Structure of human FABP5 in complex with 2-[(3-ethoxycarbonyl-4,5,6,7-tetrahydro-1-benzothiophen-2-yl)carbamoyl]cyclopentene-1-carboxylic acid, i.e. SMILES C1CCC2=C(C1)C(=C(S2)NC(=O)C1=C(C(=O)O)CCC1)C(=O)OCC with IC50=1.1 microM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.11 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 4 residues within 4Å: Chain A: T.109, T.111, E.122, V.124 No protein-ligand interaction detected (PLIP)

2 x L8T: 2-{[3-(ethoxycarbonyl)-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl}cyclopent-1-ene-1-carboxylic acid(Non-covalent)

L8T.2: 15 residues within 4Å: Chain A: F.22, M.26, L.29, M.38, G.39, A.42, K.64, A.81, D.82, R.84, I.110, V.121, C.123, R.132, Y.134 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.22, A:L.29, A:M.38, A:A.42, A:K.64, A:A.81, A:I.110, A:I.110, A:V.121 Hydrogen bonds: A:R.112, A:R.132 Salt bridges: A:R.132 L8T.3: 4 residues within 4Å: Chain A: A.34, K.37, M.38, M.41 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.34, A:K.37 Salt bridges: A:K.37

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: S.19, K.20, G.21, F.22, D.23 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.19, A:F.22, A:D.23 Water bridges: A:G.21, A:G.21, A:G.21

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: A.42, K.43, S.61, T.62 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Obst, U. et al., Crystal Structure of a human FABP5 complex. To be published

Release Date

2023-06-14

Peptides

Fatty acid-binding protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fatty acid-binding protein 5

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