SMTL ID : 7g5e.1

Crystal Structure of rat Autotaxin in complex with rac-(4S,6R,7S,8S,11S,12S,15R,16R)-4,6-dihydroxy-12,16-dimethyl-15-[rac-(2R)-6-methyl-5-methylidene-4-oxoheptan-2-yl]pentacyclo[9.7.0.01,3.03,8.012,16]octadecane-7-carboxylic acid, i.e. SMILES [C@@]123[C@@]4(C1)[C@H]([C@]1([C@](CC4)([C@H](CC1)[C@@H](CC(=O)C(=C)C(C)C)C)C)C)CC[C@H]2[C@@H]([C@@H](C[C@@H]3O)O)C(=O)O with IC50=0.0603796 microM

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.96 Å
Oligo State
monomer
Ligands
1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x YCQ: 1alpha,3beta-dihydroxy-14-methyl-23-oxo-5beta,14beta,17alpha-9,19-cycloergost-24(28)-ene-4alpha-carboxylic acid(Non-covalent)
1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
1 x ZN: ZINC ION(Non-covalent)
2 x NA: SODIUM ION(Non-functional Binders)
1 x CA: CALCIUM ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Hunziker, D. et al., Crystal Structure of a rat Autotaxin complex. To be published
Release Date
2024-12-18
Peptides
Isoform 2 of Ectonucleotide pyrophosphatase/phosphodiesterase family member 2: A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A

Isoform 2 of Ectonucleotide pyrophosphatase/phosphodiesterase family member 2

Related Entries With Identical Sequence

5s9l.1 | 5s9m.1 | 5s9n.1 | 7g2e.1 | 7g2f.1 | 7g2g.1 | 7g2h.1 | 7g2i.1 | 7g2j.1 | 7g2k.1 | 7g2l.1 | 7g2m.1 | 7g2n.1 | 7g2o.1 | 7g2p.1 | 7g2q.1 | 7g2r.1 | 7g2s.1 | 7g2t.1 | 7g2u.1 | 7g2v.1 | 7g2w.1 | 7g2x.1 | 7g2y.1 | 7g2z.1 | 7g30.1 | 7g31.1 | 7g32.1 | 7g33.1 | 7g34.1  more...