SMTL ID : 7g7o.1

Crystal Structure of rat Autotaxin in complex with 3-methyl-5-[rac-(3aR,8aS)-6-[2-cyclopropyl-6-(oxan-4-ylmethoxy)pyridine-4-carbonyl]-1,3,3a,4,5,7,8,8a-octahydropyrrolo[3,4-d]azepine-2-carbonyl]-1H-benzimidazol-2-one, i.e. SMILES C1C[C@@H]2[C@H](CCN1C(=O)c1cc(nc(c1)OCC1CCOCC1)C1CC1)CN(C2)C(=O)c1ccc2c(c1)N(C(=O)N2)C with IC50=0.00527031 microM

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.98 Å
Oligo State
monomer
Ligands
1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x CL: CHLORIDE ION(Non-functional Binders)
1 x Y3K: 6-[(3aR,8aS)-6-{2-cyclopropyl-6-[(oxan-4-yl)methoxy]pyridine-4-carbonyl}octahydropyrrolo[3,4-d]azepine-2(1H)-carbonyl]-1-methyl-1,3-dihydro-2H-benzimidazol-2-one(Non-covalent)
1 x ACT: ACETATE ION(Non-functional Binders)
2 x CA: CALCIUM ION(Non-covalent)
1 x K: POTASSIUM ION(Non-covalent)
1 x ZN: ZINC ION(Non-covalent)
1 x NA: SODIUM ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Hunziker, D. et al., Crystal Structure of a rat Autotaxin complex. To be published
Release Date
2024-12-18
Peptides
Isoform 2 of Ectonucleotide pyrophosphatase/phosphodiesterase family member 2: A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A

Isoform 2 of Ectonucleotide pyrophosphatase/phosphodiesterase family member 2

Related Entries With Identical Sequence

5s9l.1 | 5s9m.1 | 5s9n.1 | 7g2e.1 | 7g2f.1 | 7g2g.1 | 7g2h.1 | 7g2i.1 | 7g2j.1 | 7g2k.1 | 7g2l.1 | 7g2m.1 | 7g2n.1 | 7g2o.1 | 7g2p.1 | 7g2q.1 | 7g2r.1 | 7g2s.1 | 7g2t.1 | 7g2u.1 | 7g2v.1 | 7g2w.1 | 7g2x.1 | 7g2y.1 | 7g2z.1 | 7g30.1 | 7g31.1 | 7g32.1 | 7g33.1 | 7g34.1  more...