SMTL ID : 7hgf.2 (2 other biounits)

PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1262433643

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: K.76, G.77, F.78, N.79, E.80 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.77, A:N.79, A:N.79, A:E.80 Water bridges: A:F.78 SO4.2: 3 residues within 4Å: Chain A: K.15, K.17, G.18 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.18, A:Y.19 Salt bridges: A:K.15

1 x T0Y: 1-[(thiophen-3-yl)methyl]piperidin-4-ol(Non-covalent)

T0Y.3: 5 residues within 4Å: Chain A: M.16, Y.19, W.22, E.50, T.51 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:E.50 pi-Stacking: A:Y.19, A:W.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vantieghem, T. et al., Rational fragment-based design of compounds targeting the PWWP domain of the HRP family. Eur.J.Med.Chem. (2024)

Release Date

2024-11-06

Peptides

Hepatoma-derived growth factor-related protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Hepatoma-derived growth factor-related protein 2

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