SMTL ID : 7hgm.2 (2 other biounits)

PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z438067480

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: K.76, G.77, F.78, N.79, E.80 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.77, A:N.79, A:E.80 Water bridges: A:F.78, A:N.79 SO4.2: 3 residues within 4Å: Chain A: K.15, K.17, G.18 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.18, A:Y.19 Salt bridges: A:K.15

1 x 01: N-{[(4R)-5,6,7,8-tetrahydro[1,2,4]triazolo[4,3-a]pyridin-3-yl]methyl}propanamide

01.3: 5 residues within 4Å: Chain A: Y.19, W.22, F.45, T.48, E.50 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.19, A:W.22, A:F.45, A:F.45 Hydrogen bonds: A:Y.19, A:E.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vantieghem, T. et al., Rational fragment-based design of compounds targeting the PWWP domain of the HRP family. Eur.J.Med.Chem. (2024)

Release Date

2024-11-06

Peptides

Hepatoma-derived growth factor-related protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Hepatoma-derived growth factor-related protein 2

Related Entries With Identical Sequence