SMTL ID : 7hhe.3 (2 other biounits)

PanDDA analysis group deposition -- Crystal structure of HRP-2 PWWP domain in complex with Z1203252645

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.15, K.17 6 PLIP interactions: 6 interactions with chain A Water bridges: A:K.15, A:K.15, A:M.16, A:G.18 Salt bridges: A:K.15, A:K.17

1 x 01: N-methyl-N-(pyridin-3-yl)acetamide

01.2: 8 residues within 4Å: Chain A: M.16, Y.19, W.22, F.45, T.48, E.50, T.51, A.52 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.22, A:F.45, A:F.45, A:A.52 Hydrogen bonds: A:T.48, A:E.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vantieghem, T. et al., Rational fragment-based design of compounds targeting the PWWP domain of the HRP family. Eur.J.Med.Chem. (2024)

Release Date

2024-11-06

Peptides

Hepatoma-derived growth factor-related protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Hepatoma-derived growth factor-related protein 2

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