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SMTL ID : 7hog.1

Group deposition for crystallographic fragment screening of Coxsackievirus A16 (G-10) 2A protease -- Crystal structure of Coxsackievirus A16 (G-10) 2A protease in complex with Z1216861874 (A71EV2A-x0525)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.19 Å

Oligo State

monomer

Ligands

1 x YYI: 5-(difluoromethoxy)pyridin-2(3H)-one(Non-covalent)

YYI.1:

6 residues within 4Å:

Chain A: A.80, S.81, E.82, Y.83, Y.84, P.85

2 PLIP interactions:

2 interactions with chain A

Hydrophobic interactions: A:P.85
Halogen bonds: A:E.82

1 x ZN: ZINC ION(Non-covalent)

ZN.2:

4 residues within 4Å:

Chain A: C.50, C.52, C.110, H.112

4 PLIP interactions:

4 interactions with chain A

Metal complexes: A:C.50, A:C.52, A:C.110, A:H.112

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:	2 residues within 4Å: Chain A: Q.111, G.113 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.46
DMS.4:	3 residues within 4Å: Chain A: D.29, S.30, S.31 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.30, A:S.31 Salt bridges: A:D.29
DMS.5:	2 residues within 4Å: Chain A: Y.58, H.65 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:Y.58
DMS.6:	2 residues within 4Å: Chain A: V.96, G.97 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.97

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.7:

2 residues within 4Å:

Chain A: F.77, Y.88

No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Lithgo, R.M. et al., Group deposition for crystallographic fragment screening of Coxsackievirus A16 (G-10) 2A protease. To Be Published

Release Date

2024-12-18

Peptides

Protease 2A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Protease 2A

Related Entries With Identical Sequence

7hoc.1 | 7hoc.2 | 7hod.1 | 7hod.2 | 7hoe.1 | 7hoe.2 | 7hof.1 | 7hof.2 | 7hoh.1 | 7hoh.2 | 7hoi.1 | 7huf.1 | 7hug.1 | 7huh.1 | 7huh.2 | 7hui.1 | 7hui.2 | 7huj.1 | 7huj.2 | 7huk.1 | 7huk.2 | 7hul.1 | 7hun.1 | 7huo.1 | 7hup.1 | 7huq.1 | 7hur.1 | 7hus.1 | 7hut.1 | 7hut.2 more...less...

7huu.1 | 7huv.1 | 7huw.1 | 7hux.1 | 7huy.1 | 7huz.1 | 7hv0.1 | 7hv0.2 | 7hv1.1 | 7hv2.1 | 7hv3.1 | 7hv4.1 | 7hv5.1 | 7hv5.2 | 7hv6.1 | 7hv7.1 | 7hv7.2 | 7hv8.1 | 7hv9.1 | 7hva.1 | 7hva.2 | 7hvb.1 | 7hvc.1 | 7hvd.1 | 7hve.1 | 7hvf.1 | 7hvf.2 | 7hvg.1 | 7hvh.1 | 7hvi.1 | 7hvj.1 | 7hvk.1 | 7hvl.1 | 7hvl.2 | 7hvm.1 | 7hvn.1 | 7hvn.2 | 7hvo.1 | 7hvo.2 | 7hvq.1 | 7hvr.1 | 7hvs.1 | 7hvt.1 | 7hvt.2 | 7hvu.1 | 7hvu.2 | 7hvv.1 | 7hvw.1 | 7hvw.2 | 7hvx.1 | 7hvx.2 | 7hvy.1 | 7hvy.2 | 7hvz.1 | 7hvz.2 | 7hw0.1 | 7hw1.1 | 7hw1.2 | 7hw3.1 | 7hw4.1 | 7hw4.2 | 7hw5.1 | 7hw6.1 | 7hw8.1 | 7hw8.2 | 7hw9.1 | 7hw9.2 | 7hwa.1 | 7hwb.1 | 7hwb.2 | 7hwc.1 | 7hwc.2 | 7hwd.1 | 7hwe.1 | 7hwf.1 | 7hwf.2 | 7hwg.1 | 7hwg.2 | 7hwh.1 | 7hwi.1 | 7hwj.1 | 7hwk.1 | 7hwl.1 | 7hwl.2 | 7hwm.1 | 7hwm.2 | 7hwn.1 | 7hwo.1 | 7hwp.1 | 7hwq.1 | 7hwr.1 | 7hws.1 | 7hws.2 | 7hwt.1 | 7hwu.1 | 7hwv.1 | 7hwv.2 | 7hww.1 | 7hww.2 | 7hwx.1 | 7hwx.2 | 7hwy.1 | 7hwy.2 | 7hwz.1 | 7hwz.2 | 7hx0.1 | 7hx0.2 | 7hx1.1 | 7hx2.1 | 7hx3.1 | 7hx3.2 | 7hx4.1 | 7hx4.2 | 7hx5.1 | 7hx5.2 | 7hx6.1 | 7hx6.2 | 7hx7.1 | 7hx8.1 | 7hx8.2 | 7hx9.1 | 7hxa.1 | 7hxa.2 | 7hxb.1 | 7hxb.2 | 7hxc.1 | 7hxd.1 | 7hxe.1 | 7hxf.1 | 7hxf.2 | 7hxg.1 | 7hxg.2 | 7hxh.1 | 7hxi.1 | 7hxi.2 | 7hxj.1 | 7hxk.1 | 7hxk.2 | 7hxl.1 | 7hxl.2 | 7hxm.1 | 7hxm.2 | 7hxn.1 | 7hxn.2 | 7hxo.1 | 7hxp.1 | 7hxq.1 | 7hxq.2 | 7hxr.1 | 7hxr.2 | 7hxs.1 | 7hxs.2 | 7hxt.1 | 7hxt.2 | 7hxu.1 | 7hxu.2 | 7hxv.1 | 7hxw.1 | 7hxw.2 | 7hxx.1 | 7hxx.2 | 7hxy.1 | 7hxz.1 | 7hxz.2 | 7hy0.1 | 7hy0.2 | 7hy1.1 | 7hy2.1 | 7hy2.2 | 7hy3.1 | 7hy4.1 | 7hy4.2 | 7hy5.1 | 7hy6.1 | 7hy7.1 | 7hy8.1 | 7hy8.2 | 7hy9.1 | 7hya.1 | 7hyb.1 | 7hyc.1 | 7hyd.1 | 7hyd.2 | 7hye.1 | 7hye.2 | 7hyf.1 | 7hyg.1 | 7hyh.1 | 7hyi.1 | 7hyi.2 | 7hyj.1 | 7hyk.1 | 7hyl.1 | 7hym.1 | 7hyn.1 | 7hyn.2 | 7hyo.1 | 7hyo.2 | 7hyp.1 | 7hyq.1 | 7hyq.2 | 7hyr.1 | 7hys.1 | 7hys.2 | 7hyt.1 | 7hyu.1 | 7hyv.1 | 7hyw.1 | 7hyx.1 | 7hyy.1 | 7hyy.2 | 7hyz.1 | 7hyz.2 | 7hz0.1 | 7hz0.2 | 7hz1.1 | 7hz1.2 | 7hz2.1 | 7hz2.2 | 7hz3.1 | 7hz4.1 | 7hz5.1 | 7hz5.2 | 7hz6.1 | 7hz6.2 | 7hz7.1 | 7hz8.1 | 7hz9.1 | 7hza.1 | 7hza.2 | 7hzb.1 | 7hzb.2 | 7hzc.1 | 7hzd.1 | 7hze.1 | 7hzf.1 | 7hzf.2 | 7hzg.1 | 7hzh.1 | 7hzi.1 | 7hzj.1 | 7hzk.1 | 7hzl.1 | 7hzm.1 | 7hzn.1 | 7hzo.1 | 7hzp.1 | 7hzq.1 | 7hzr.1 | 7hzr.2 | 7hzs.1 | 7hzs.2 | 7hzt.1 | 7hzt.2 | 7hzu.1 | 7hzu.2 | 7i2y.1 | 7i2y.2 | 7i2z.1 | 7i2z.2 | 7i30.1 | 7i30.2 | 7i31.1 | 7i31.2 | 7i32.1 | 7i32.2 | 7i33.1 | 7i33.2 | 7i34.1 | 7i34.2 | 7i35.1 | 7i35.2 | 7i36.1 | 7i36.2 | 7i37.1 | 7i37.2 | 7i38.1 | 7i38.2 | 7i39.1 | 7i39.2 | 7i3a.1 | 7i3b.1 | 7i3b.2 | 7i3c.1 | 7i3c.2 | 7i3d.1 | 7i3d.2 | 7i3e.1 | 7i3e.2 | 7i3f.1 | 7i3f.2 | 7i3g.1 | 7i3h.1 | 7i3i.1 | 7i3i.2 | 7i3j.1 | 7i3j.2 | 7i3k.1 | 7i3l.1 | 7i3l.2 | 7i3m.1 | 7i3m.2 | 7i3n.1 | 7i3o.1 | 7i3p.1 | 7i3q.1 | 7i3q.2 | 7i3r.1 | 7i3s.1 | 7i3t.1 | 7i3u.1 | 7i3v.1 | 7i3v.2 | 7i3w.1 | 7i3w.2 | 7i3x.1 | 7i3y.1 | 7i3y.2 | 7i3z.1 | 7i3z.2 | 7i40.1 | 7i41.1 | 7i41.2 | 7i42.1 | 7i42.2 | 7i43.1 | 7i44.1 | 7i45.1 | 7i45.2 | 7i46.1 | 7i47.1 | 7i47.2 | 7i48.1 | 7i48.2 | 7i49.1 | 7i4a.1 | 7i4b.1 | 7i4c.1 | 7i4d.1 | 7i4e.1 | 7i4e.2 | 7i4f.1 | 7i4g.1 | 7i4g.2 | 7i4h.1 | 7i4h.2 | 7i4i.1 | 7i4i.2 | 7i4j.1 | 7i4k.1 | 7i4l.1 | 7i4m.1 | 7i4m.2 | 7i4n.1 | 7i4n.2 | 7i4o.1 | 7i4p.1 | 7i4q.1 | 7i4q.2 | 7i4r.1 | 7i4s.1 | 7i4t.1 | 7i4t.2 | 7i4u.1 | 7i4u.2 | 7i4v.1 | 7i4v.2 | 7i4w.1 | 7i4x.1 | 7i4x.2 | 7i4y.1 | 7i4y.2 | 7i4z.1 | 7i50.1 | 7i50.2 | 7i51.1 | 7i52.1 | 7i52.2 | 7i53.1 | 7i54.1 | 7i54.2 | 7i55.1 | 7i55.2 | 7i56.1 | 7i56.2 | 7i57.1 | 7i57.2 | 7i58.1 | 7i59.1 | 7i59.2 | 7i5a.1 | 7i5b.1 | 7i5c.1 | 7i5c.2 | 7i5d.1 | 7i5d.2 | 7i5e.1 | 7i5e.2 | 7i5f.1 | 7i5f.2 | 7i5g.1 | 7i5h.1 | 7i5i.1 | 7i5j.1 | 7i5j.2 | 7i5k.1 | 7i5l.1 | 7i5l.2 | 7i5m.1 | 7i5n.1 | 7i5o.1 | 7i5p.1 | 7i5q.1 | 7i5r.1 | 7i5r.2 | 7i5s.1 | 7i5s.2 | 7i5t.1 | 7i5t.2 | 7i5u.1 | 7i5u.2 | 7i5v.1 | 7i5v.2 | 7i5w.1 | 7i5w.2 | 7i5x.1 | 7i5x.2 | 7i5y.1 | 7i5z.1 | 7i5z.2 | 7i60.1 | 7i60.2 | 7i61.1 | 7i61.2 | 7i62.1 | 7i63.1 | 7i64.1 | 7i65.1 | 7i66.1 | 7i67.1 | 7i67.2 | 7i68.1 | 7i69.1 | 7i6a.1 | 7i6b.1 | 7i6b.2 | 7i6c.1 | 7i6c.2 | 7i6d.1 | 7i6e.1 | 7i6f.1 | 7i6f.2 | 7i6g.1 | 7i6g.2 | 7i6h.1 | 7i6h.2 | 7i6i.1 | 7i6j.1 | 7i6j.2 | 7i6k.1 | 7i6k.2 | 7i6l.1 | 7i6m.1 | 7i6m.2 | 7i6n.1 | 7i6o.1 | 7i6o.2 | 7i6p.1 | 7i6p.2 | 7i6q.1 | 7i6q.2 | 7i6r.1 | 7i6s.1 | 7i6s.2 | 7i6t.1 | 7i6t.2 | 7i6u.1 | 7i6u.2 | 7i6v.1 | 7i6v.2 | 7i6w.1 | 7i6w.2 | 7i6x.1 | 7i6y.1 | 7i6y.2 | 7i6z.1 | 7i6z.2 | 7i70.1 | 7i70.2 | 7i71.1 | 7i72.1 | 7i72.2 | 7i73.1 | 7i73.2 | 7i74.1 | 7i75.1 | 7i76.1 | 7i77.1 | 7i77.2 | 7i78.1 | 7i79.1 | 7i79.2 | 7i7a.1 | 7i7b.1 | 7i7b.2 | 7i7c.1 | 7i7c.2 | 7i7d.1 | 7i7e.1 | 7i7e.2 | 7i7f.1 | 7i7f.2 | 7i7g.1 | 7i7h.1 | 7i7i.1 | 7i7i.2 | 7i7j.1 | 7i7j.2 | 7i7k.1 | 7i7l.1 | 7i7m.1 | 7i7n.1 | 7i7n.2 | 7i7o.1 | 7i7p.1 | 7i7q.1 | 7i7r.1 | 7i7r.2 | 7i7s.1 | 7i7s.2 | 7i7t.1 | 7i7t.2 | 7i7u.1 | 7i7u.2 | 7i7v.1 | 7i7v.2 | 7i7w.1 | 7i7x.1 | 7i7x.2 | 7i8x.1 | 7i8y.1 | 7i8z.1 | 8poa.1 | 8poa.2

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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