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SMTL ID : 7i7n.2 (1 other biounit)

Group deposition of Coxsackievirus A16 (G-10) 2A protease in complex with inhibitors from the ASAP AViDD centre -- Crystal structure of Coxsackievirus A16 (G-10) 2A protease in complex with ASAP-0038424-001 (A71EV2A-x5262)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

1 x 01: 2-[(1s,4s)-2-{[2-(methylsulfanyl)phenyl]acetyl}-2-azabicyclo[2.1.1]hexan-1-yl]acetamide

01.1:

18 residues within 4Å:

Chain A: H.15, D.33, V.78, S.81, Y.83, Y.84, R.87, Q.89, S.99, E.100, P.101, C.104, V.118, S.119, T.120, G.121, G.122
Ligands: GOL.3

7 PLIP interactions:

7 interactions with chain A

Hydrophobic interactions: A:V.78, A:Y.83, A:P.101
Hydrogen bonds: A:R.87, A:R.87, A:Q.89, A:S.119

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:	5 residues within 4Å: Chain A: F.77, V.78, L.94, T.120, G.121 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.121
GOL.3:	3 residues within 4Å: Chain A: T.120, G.121 Ligands: 01.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.121

1 x ZN: ZINC ION(Non-covalent)

ZN.4:

4 residues within 4Å:

Chain A: C.50, C.52, C.110, H.112

4 PLIP interactions:

4 interactions with chain A

Metal complexes: A:C.50, A:C.52, A:C.110, A:H.112

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5:

6 residues within 4Å:

Chain A: G.2, A.3, Y.58, G.105, G.106, I.107

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:I.107

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Lithgo, R.M. et al., Group deposition of Coxsackievirus A16 (G-10) 2A protease in complex with inhibitors from the ASAP AViDD centre. To Be Published

Release Date

2025-04-02

Peptides

Protease 2A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Protease 2A

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7hoc.1 | 7hoc.2 | 7hod.1 | 7hod.2 | 7hoe.1 | 7hoe.2 | 7hof.1 | 7hof.2 | 7hog.1 | 7hoh.1 | 7hoh.2 | 7hoi.1 | 7huf.1 | 7hug.1 | 7huh.1 | 7huh.2 | 7hui.1 | 7hui.2 | 7huj.1 | 7huj.2 | 7huk.1 | 7huk.2 | 7hul.1 | 7hun.1 | 7huo.1 | 7hup.1 | 7huq.1 | 7hur.1 | 7hus.1 | 7hut.1 more...less...

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Background

Transparent

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