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SMTL ID : 7hul.1

Group deposition of Coxsackievirus A16 (G-10) 2A protease in complex with inhibitors from the ASAP AViDD centre -- Crystal structure of Coxsackievirus A16 (G-10) 2A protease in complex with ASAP-0031733-001 (A71EV2A-x3181)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.26 Å

Oligo State

monomer

Ligands

2 x 01: 1-methyl-N-[2-(1H-1,2,4-triazol-1-yl)ethyl]-1H-indazole-3-carboxamide

01.1:	17 residues within 4Å: Chain A: H.15, V.78, S.81, Y.83, Y.84, R.87, Q.89, S.99, E.100, P.101, C.104, V.118, S.119, T.120, G.121, G.122 Ligands: DMS.6 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.101 Hydrogen bonds: A:S.81, A:S.81, A:R.87, A:S.119 Salt bridges: A:D.33
01.2:	6 residues within 4Å: Chain A: R.14, H.15, H.19, W.22, Y.83, Y.84 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.22 Hydrogen bonds: A:R.14, A:R.14, A:Y.83 Water bridges: A:A.17, A:A.17 pi-Stacking: A:H.19, A:W.22, A:W.22

1 x ZN: ZINC ION(Non-covalent)

ZN.3:

4 residues within 4Å:

Chain A: C.50, C.52, C.110, H.112

4 PLIP interactions:

4 interactions with chain A

Metal complexes: A:C.50, A:C.52, A:C.110, A:H.112

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4:	3 residues within 4Å: Chain A: D.29, S.30, S.31 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.30, A:S.31 Salt bridges: A:D.29
DMS.5:	2 residues within 4Å: Chain A: V.96, G.97 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.98
DMS.6:	6 residues within 4Å: Chain A: V.78, E.79, S.81, T.120, G.121 Ligands: 01.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.121

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Lithgo, R.M. et al., Group deposition of Coxsackievirus A16 (G-10) 2A protease in complex with inhibitors from the ASAP AViDD centre. To Be Published

Release Date

2025-02-26

Peptides

Protease 2A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Protease 2A

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Background

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