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SMTL ID : 7hzk.1

Group deposition of Coxsackievirus A16 (G-10) 2A protease in complex with inhibitors from the ASAP AViDD centre -- Crystal structure of Coxsackievirus A16 (G-10) 2A protease in complex with ASAP-0030249-001 (A71EV2A-x2293)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

4 residues within 4Å:

Chain A: C.50, C.52, C.110, H.112

4 PLIP interactions:

4 interactions with chain A

Metal complexes: A:C.50, A:C.52, A:C.110, A:H.112

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:	4 residues within 4Å: Chain A: T.46, Q.111, H.112, G.113 No protein-ligand interaction detected (PLIP)
DMS.3:	2 residues within 4Å: Chain A: Y.58, H.65 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:Y.58
DMS.4:	2 residues within 4Å: Chain A: V.96, G.97 No protein-ligand interaction detected (PLIP)

1 x 01: 1-methyl-N-{[(3S)-1,2,3,4-tetrahydroisoquinolin-3-yl]methyl}-1H-indazole-3-carboxamide

01.5:

15 residues within 4Å:

Chain A: H.15, D.33, S.81, Y.84, P.85, R.87, Q.89, S.99, E.100, P.101, C.104, V.118, S.119, T.120, G.121

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:H.15, A:Y.84, A:Y.84, A:R.87
Hydrogen bonds: A:S.119, A:S.119

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Lithgo, R.M. et al., Group deposition of Coxsackievirus A16 (G-10) 2A protease in complex with inhibitors from the ASAP AViDD centre. To Be Published

Release Date

2025-02-12

Peptides

Protease 2A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Protease 2A

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7hoc.1 | 7hoc.2 | 7hod.1 | 7hod.2 | 7hoe.1 | 7hoe.2 | 7hof.1 | 7hof.2 | 7hog.1 | 7hoh.1 | 7hoh.2 | 7hoi.1 | 7huf.1 | 7hug.1 | 7huh.1 | 7huh.2 | 7hui.1 | 7hui.2 | 7huj.1 | 7huj.2 | 7huk.1 | 7huk.2 | 7hul.1 | 7hun.1 | 7huo.1 | 7hup.1 | 7huq.1 | 7hur.1 | 7hus.1 | 7hut.1 more...less...

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Background

Transparent

Resolution

Low
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