SMTL ID : 7i9p.1

Group deposition of ZIKV NS2B-NS3 protease in complex with inhibitors from ASAP Discovery Consortium -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with ASAP-0027707-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

hetero-1-1-mer

Ligands

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 3 residues within 4Å: Chain B: K.45, G.46, A.47 No protein-ligand interaction detected (PLIP) DMS.2: 5 residues within 4Å: Chain B: G.142, G.144, V.146, Y.152 Ligands: 01.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.144 DMS.5: 3 residues within 4Å: Chain B: P.122, A.123 Ligands: 01.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.123

1 x 01: 3-(aminomethyl)-5-chloro-N-[3-(2H-tetrazol-5-yl)phenyl]benzamide

01.3: 15 residues within 4Å: Chain B: H.42, K.45, D.120, Y.121, P.122, A.123, T.125, S.126, Y.141, G.142, N.143, Y.152 Ligands: DMS.2, SO4.4, DMS.5 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:H.42 Hydrogen bonds: B:K.45, B:K.45, B:D.120, B:S.126, B:G.142 pi-Stacking: B:H.42, B:Y.152

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain B: D.120, Y.121, P.122 Ligands: 01.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., Group deposition of ZIKV NS2B-NS3 protease in complex with inhibitors from ASAP Discovery Consortium. To Be Published

Release Date

2025-04-23

Peptides

Serine protease subunit NS2B: A
Serine protease NS3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

Serine protease NS3

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