SMTL ID : 7kn7.1

Crystal structure of SARS-CoV-2 receptor binding domain complexed with nanobody VHH W and antibody Fab CC12.3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.25, L.50 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koenig, P.A. et al., Structure-guided multivalent nanobodies block SARS-CoV-2 infection and suppress mutational escape. Science (2021)

Release Date

2021-01-20

Peptides

Spike protein S1: A
VHH W: B
CC12.3 Fab heavy chain: C
CC12.3 Fab light chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

Spike protein S1

VHH W

CC12.3 Fab heavy chain

CC12.3 Fab light chain

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