SMTL ID : 7l6x.1

Crystal structure of the tandem bromodomain (BD1, BD2) of human TAF1 bound to GNE-371

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x G9V: 6-(but-3-en-1-yl)-4-[1-methyl-6-(morpholine-4-carbonyl)-1H-benzimidazol-4-yl]-1,6-dihydro-7H-pyrrolo[2,3-c]pyridin-7-one(Non-covalent)

G9V.1: 15 residues within 4Å: Chain A: W.156, P.157, F.158, H.160, P.161, V.162, N.163, F.166, V.167, Y.170, M.178, D.179, Y.212, N.213, Y.219 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.158, A:V.162, A:F.166, A:V.167, A:D.179 Hydrogen bonds: A:N.163, A:N.213, A:N.213, A:Y.219 pi-Stacking: A:W.156, A:Y.219, A:Y.219

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: N.40, V.43 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.40 EDO.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, R.M. et al., Discovery of Dual TAF1-ATR Inhibitors and Ligand-Induced Structural Changes of the TAF1 Tandem Bromodomain. J.Med.Chem. (2022)

Release Date

2021-06-30

Peptides

Transcription initiation factor TFIID subunit 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transcription initiation factor TFIID subunit 1

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