SMTL ID : 7lay.2 (1 other biounit)

Crystal structure of the first bromodomain (BD1) of human BRD3 bound to SG3-179

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x 5W2: 4-[[4-[[3-(~{tert}-butylsulfonylamino)-4-chloranyl-phenyl]amino]-5-methyl-pyrimidin-2-yl]amino]-2-fluoranyl-~{N}-(1-methylpiperidin-4-yl)benzamide(Non-covalent)

5W2.1: 12 residues within 4Å: Chain A: W.36, P.37, F.38, V.42, K.46, L.47, L.49, N.95, D.99, D.100, I.101, M.104 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.36, A:P.37, A:P.37, A:F.38, A:V.42, A:L.47, A:L.49, A:D.100, A:I.101 Hydrogen bonds: A:P.37, A:N.95, A:N.95 Water bridges: A:I.101

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 4 residues within 4Å: Chain A: D.51, Y.52, H.53, K.54 No protein-ligand interaction detected (PLIP) DMS.3: 1 residues within 4Å: Chain A: R.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, R.M. et al., Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. (2021)

Release Date

2021-07-14

Peptides

Bromodomain-containing protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bromodomain-containing protein 3

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