SMTL ID : 7lb2.1

Crystal structure of the tandem bromodomain (BD1, BD2) of human TAF1 bound to ZS1-589

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: I.23, N.24, R.27, H.36, L.57, Q.58, R.61 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.61, A:R.61 EDO.2: 10 residues within 4Å: Chain A: P.34, F.35, V.39, Y.47, S.86, Y.89, N.90, L.96 Ligands: EDO.7, EDO.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.90 Water bridges: A:Y.47 EDO.3: 9 residues within 4Å: Chain A: M.150, A.151, V.152, P.153, D.154, S.155, W.156, H.159 Ligands: EDO.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.154, A:S.155, A:W.156 Water bridges: A:D.154 EDO.4: 4 residues within 4Å: Chain A: W.156, H.159, H.160 Ligands: EDO.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.160 EDO.6: 3 residues within 4Å: Chain A: Y.171, K.172, V.175 No protein-ligand interaction detected (PLIP) EDO.7: 7 residues within 4Å: Chain A: V.39, V.44, Y.47, Y.89, N.90, L.96 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.90 EDO.8: 7 residues within 4Å: Chain A: P.34, F.35, T.37, P.38, V.39, N.40 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.40 EDO.9: 8 residues within 4Å: Chain A: P.70, S.71, E.73, E.74, N.126, L.129, K.189, H.190 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.126

1 x HEZ: HEXANE-1,6-DIOL(Non-covalent)

HEZ.5: 6 residues within 4Å: Chain A: K.191, Y.192, S.197, D.200, D.201, L.204 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.200 Hydrogen bonds: A:K.191, A:D.200

1 x XWY: (3R)-3-methyl-4-{6-[1-(S-methylsulfonimidoyl)cyclopropyl]-2-(naphthalen-1-yl)pyrimidin-4-yl}morpholine(Non-covalent)

XWY.10: 13 residues within 4Å: Chain A: W.156, P.157, F.158, H.160, P.161, V.162, N.163, F.166, V.167, Y.170, Y.212, N.213, Y.219 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.156, A:V.162, A:F.166, A:Y.212 Hydrogen bonds: A:N.163, A:N.213 Water bridges: A:P.161, A:Y.170 pi-Stacking: A:W.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, M.R. et al., Crystal structure of the tandem bromodomain (BD1, BD2) of human TAF1 bound to ZS1-589. To Be Published

Release Date

2021-07-14

Peptides

Transcription initiation factor TFIID subunit 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transcription initiation factor TFIID subunit 1

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