SMTL ID : 7lf1.1

Trimeric human Arginase 1 in complex with mAb3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-mer

Ligands

12 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 7 residues within 4Å: Chain A: H.101, D.124, H.126, D.128, D.232, D.234 Ligands: MN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.101, A:D.124, A:D.124, A:D.232 MN.2: 7 residues within 4Å: Chain A: D.124, A.125, H.126, D.232, D.234, T.246 Ligands: MN.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.124, A:H.126, A:D.234 MN.3: 7 residues within 4Å: Chain N: H.101, D.124, H.126, D.128, D.232, D.234 Ligands: MN.4 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:H.101, N:D.124, N:D.124, N:D.232 MN.4: 7 residues within 4Å: Chain N: D.124, A.125, H.126, D.232, D.234, T.246 Ligands: MN.3 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:D.124, N:H.126, N:D.234 MN.5: 7 residues within 4Å: Chain O: H.101, D.124, H.126, D.128, D.232, D.234 Ligands: MN.6 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:H.101, O:D.124, O:D.124, O:D.232 MN.6: 7 residues within 4Å: Chain O: D.124, A.125, H.126, D.232, D.234, T.246 Ligands: MN.5 3 PLIP interactions: 3 interactions with chain O Metal complexes: O:D.124, O:H.126, O:D.234 MN.7: 7 residues within 4Å: Chain P: H.101, D.124, H.126, D.128, D.232, D.234 Ligands: MN.8 4 PLIP interactions: 4 interactions with chain P Metal complexes: P:H.101, P:D.124, P:D.124, P:D.232 MN.8: 7 residues within 4Å: Chain P: D.124, A.125, H.126, D.232, D.234, T.246 Ligands: MN.7 3 PLIP interactions: 3 interactions with chain P Metal complexes: P:D.124, P:H.126, P:D.234 MN.9: 7 residues within 4Å: Chain Q: H.101, D.124, H.126, D.128, D.232, D.234 Ligands: MN.10 4 PLIP interactions: 4 interactions with chain Q Metal complexes: Q:H.101, Q:D.124, Q:D.124, Q:D.232 MN.10: 7 residues within 4Å: Chain Q: D.124, A.125, H.126, D.232, D.234, T.246 Ligands: MN.9 3 PLIP interactions: 3 interactions with chain Q Metal complexes: Q:D.124, Q:H.126, Q:D.234 MN.11: 7 residues within 4Å: Chain R: H.101, D.124, H.126, D.128, D.232, D.234 Ligands: MN.12 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:H.101, R:D.124, R:D.124, R:D.232 MN.12: 7 residues within 4Å: Chain R: D.124, A.125, H.126, D.232, D.234, T.246 Ligands: MN.11 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:D.124, R:H.126, R:D.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Palte, R.L. et al., Cryo-EM structures of inhibitory antibodies complexed with arginase 1 provide insight into mechanism of action. Commun Biol (2021)

Release Date

2021-09-01

Peptides

Arginase-1: ANOPQR
mAb3 heavy chain: BDEHJK
mAb3 light chain: CFGILM

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N
B

O
C

P
J

Q
M

R
N

B
D

D
F

E
G

H
K

J
O

K
P

C
E

F
H

G
I

I
L

L
Q

M
R

Arginase-1

mAb3 heavy chain

mAb3 light chain

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