SMTL ID : 7lf7.1 (1 other biounit)

Fab 6D12 bound to ApoL1 NTD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x EOH: ETHANOL(Non-functional Binders)

EOH.1: 8 residues within 4Å: Chain B: Q.37, L.47, I.58, P.59, R.61, F.62, E.81, D.82 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.37, B:R.61, B:D.82

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain C: F.25, D.28, A.29, F.33, F.55, A.59, L.61, L.69 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.28, C:D.28 GOL.3: 4 residues within 4Å: Chain C: N.41, L.44, L.45, F.55 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ultsch, M. et al., Structures of the ApoL1 and ApoL2 N-terminal domains reveal a non-classical four-helix bundle motif. Commun Biol (2021)

Release Date

2021-08-04

Peptides

Fab 6D12 heavy chain: A
Fab 6D12 light chain: B
Apolipoprotein L1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
M

Fab 6D12 heavy chain

Fab 6D12 light chain

Apolipoprotein L1

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