SMTL ID : 7lfb.1

Fab 7D6 bound to ApoL1 NTD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: I.100, D.102, Y.105, S.107 Chain B: Y.49 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.105 GOL.5: 12 residues within 4Å: Chain A: L.149, F.174, P.175, V.177, S.185, L.186, S.187 Chain B: Q.160, S.162, S.176, S.177, T.178 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:L.186, A:S.187, A:S.187, B:S.162, B:T.178, B:T.178

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 9 residues within 4Å: Chain A: G.42 Chain B: R.38, Q.40, A.84, T.85, N.103, L.104, E.105, E.165 3 PLIP interactions: 3 interactions with chain B Water bridges: B:T.85 Salt bridges: B:R.38, B:E.165

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain B: S.59, R.61, H.79 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.59, B:S.59 Water bridges: B:H.79, B:H.79 Salt bridges: B:R.61, B:H.79 SO4.4: 2 residues within 4Å: Chain B: N.28, R.69 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.28 Salt bridges: B:R.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ultsch, M. et al., Structures of the ApoL1 and ApoL2 N-terminal domains reveal a non-classical four-helix bundle motif. Commun Biol (2021)

Release Date

2021-08-04

Peptides

Fab 7D6 heavy chain: A
Fab 7D6 light chain: B
Apolipoprotein L1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
X

Fab 7D6 heavy chain

Fab 7D6 light chain

Apolipoprotein L1

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