- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 5 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.2: 29 residues within 4Å:- Chain B: T.39, F.42, A.43, I.50, A.94, A.97, F.98, W.101, E.105, I.118, A.121, F.122, F.124, A.125, Y.129, Y.149, G.150, H.154, L.239, V.242
- Chain C: Y.211, A.214, L.215, A.218, M.219, W.253, M.257
- Ligands: BCL.4, BCL.5
14 PLIP interactions:13 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:A.43, B:I.50, B:A.94, B:A.97, B:A.121, B:F.122, B:F.122, B:F.124, B:Y.129, B:Y.149, B:L.239, B:V.242, B:V.242, C:A.214
BPH.13: 21 residues within 4Å:- Chain B: F.182, A.185, L.186, A.189, L.190, L.220
- Chain C: G.64, F.68, A.126, V.127, W.130, T.134, T.147, A.150, F.151, A.154, A.274, V.275, T.278
- Ligands: BCL.6, BCL.7
10 PLIP interactions:7 interactions with chain C, 3 interactions with chain B- Hydrophobic interactions: C:F.68, C:W.130, C:F.151, C:F.151, C:A.154, C:T.278, B:F.182, B:A.185, B:L.190
- pi-Stacking: C:F.151
- 2 x U10: UBIQUINONE-10(Non-covalent)
U10.3: 12 residues within 4Å:- Chain B: L.190, H.191, L.194, E.213, D.214, F.217, Y.223, S.224, I.225, G.226, T.227, I.230
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:L.190, B:L.194, B:F.217, B:F.217, B:Y.223, B:I.225, B:I.230, B:I.230
- Hydrogen bonds: B:I.225, B:G.226
U10.14: 19 residues within 4Å:- Chain B: F.30, W.101
- Chain C: M.219, H.220, T.223, A.249, A.250, W.253, M.257, F.259, N.260, A.261, M.263, I.266, W.269, M.273
- Ligands: LDA.1, BCL.4, BCL.5
13 PLIP interactions:11 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:M.219, C:W.253, C:M.257, C:F.259, C:A.261, C:I.266, C:I.266, C:W.269, C:W.269, B:F.30, B:W.101
- Hydrogen bonds: C:T.223, C:A.261
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
BCL.4: 29 residues within 4Å:- Chain B: F.98, A.125, I.126, A.128, Y.129, L.132, W.157, V.158, S.159, T.161, G.162, Y.163, N.167, F.168, H.169, H.174, A.177, I.178, F.181, S.245, A.246, C.248, M.249
- Chain C: Y.211
- Ligands: BPH.2, BCL.5, BCL.6, BCL.7, U10.14
14 PLIP interactions:14 interactions with chain B,- Hydrophobic interactions: B:F.98, B:A.125, B:A.128, B:W.157, B:T.161, B:Y.163, B:F.168, B:F.168, B:A.177, B:I.178, B:F.181, B:F.181
- Hydrogen bonds: B:S.245
- Metal complexes: B:H.174
BCL.5: 19 residues within 4Å:- Chain B: Y.129, L.132, F.147, I.151, H.154, L.155, V.158
- Chain C: F.198, G.204, I.207, A.208, Y.211, G.212, L.215
- Ligands: BPH.2, BCL.4, BCL.7, LDA.8, U10.14
11 PLIP interactions:6 interactions with chain B, 5 interactions with chain C,- Hydrophobic interactions: B:Y.129, B:L.132, B:F.147, B:F.147, B:L.155, C:F.198, C:I.207, C:I.207, C:L.215
- Metal complexes: B:H.154
- Water bridges: C:G.204
BCL.6: 16 residues within 4Å:- Chain B: H.169, M.175, I.178, S.179, T.183
- Chain C: M.123, L.161, V.176, I.180, H.183, L.184, T.187
- Ligands: BCL.4, BCL.7, BPH.13, SPO.15
8 PLIP interactions:5 interactions with chain C, 3 interactions with chain B,- Hydrophobic interactions: C:L.161, C:V.176, C:I.180, C:L.184, B:I.178, B:I.178
- Metal complexes: C:H.183
- Hydrogen bonds: B:T.183
BCL.7: 27 residues within 4Å:- Chain B: V.158, Y.163, F.182
- Chain C: M.123, V.127, A.154, L.157, W.158, L.161, T.187, N.188, F.190, S.191, N.196, L.197, F.198, H.203, S.206, I.207, Y.211, V.277, G.281, I.285
- Ligands: BCL.4, BCL.5, BCL.6, BPH.13
12 PLIP interactions:11 interactions with chain C, 1 interactions with chain B,- Hydrophobic interactions: C:V.127, C:L.157, C:W.158, C:N.188, C:F.190, C:F.198, C:I.207, C:V.277, C:I.285, B:V.158
- Hydrogen bonds: C:S.206
- Metal complexes: C:H.203
- 1 x FE: FE (III) ION(Non-covalent)
- 1 x SPO: SPHEROIDENE(Non-covalent)
SPO.15: 18 residues within 4Å:- Chain C: F.68, F.69, I.71, G.72, W.76, F.86, W.116, S.120, M.123, W.158, L.161, G.162, F.163, W.172, V.176, I.180, H.183
- Ligands: BCL.6
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:F.68, C:F.69, C:I.71, C:W.116, C:W.158, C:L.161, C:F.163, C:F.163, C:W.172, C:V.176, C:I.180
- 1 x CDL: CARDIOLIPIN(Non-covalent)
CDL.16: 16 residues within 4Å:- Chain A: A.16, S.19, F.23, G.26, L.27, Y.30
- Chain B: N.200, P.201
- Chain C: G.144, K.145, H.146, W.149, W.156, R.268, W.272, L.279
16 PLIP interactions:12 interactions with chain C, 4 interactions with chain A- Hydrophobic interactions: C:W.149, C:W.149, C:W.149, C:W.156, C:W.272, C:W.272, C:L.279, A:F.23, A:F.23, A:Y.30, A:Y.30
- Hydrogen bonds: C:K.145
- Salt bridges: C:H.146, C:H.146, C:H.146, C:R.268
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Weaver, J.B. et al., Photosynthetic reaction center variants made via genetic code expansion show Tyr at M210 tunes the initial electron transfer mechanism. Proc.Natl.Acad.Sci.USA (2021)
- Release Date
- 2021-12-29
- Peptides
- Reaction center protein H chain: A
Reaction center protein L chain: B
Reaction center protein M chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
HB
LC
M - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 5 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
- 2 x U10: UBIQUINONE-10(Non-covalent)
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- 1 x FE: FE (III) ION(Non-covalent)
- 1 x SPO: SPHEROIDENE(Non-covalent)
- 1 x CDL: CARDIOLIPIN(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Weaver, J.B. et al., Photosynthetic reaction center variants made via genetic code expansion show Tyr at M210 tunes the initial electron transfer mechanism. Proc.Natl.Acad.Sci.USA (2021)
- Release Date
- 2021-12-29
- Peptides
- Reaction center protein H chain: A
Reaction center protein L chain: B
Reaction center protein M chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
HB
LC
M - Membrane
-
We predict this structure to be a membrane protein.