- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-22-21-2-mer
- Ligands
- 51 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- 4 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.3: 26 residues within 4Å:- Chain A: I.50, I.90, A.94, A.97, F.98, W.101, E.105, I.118, A.121, F.122, A.125, Y.149, S.238, L.239, V.242
- Chain B: Y.211, A.214, L.215, A.218, M.219, W.253, M.257
- Ligands: BCL.1, BCL.2, U10.9, PC1.13
16 PLIP interactions:12 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:I.50, A:I.90, A:A.94, A:A.97, A:A.121, A:F.122, A:F.122, A:A.125, A:Y.149, A:Y.149, A:L.239, A:V.242, B:Y.211, B:A.214, B:L.215, B:A.218
BPH.6: 18 residues within 4Å:- Chain A: F.182, A.185, L.186, A.189, L.190, L.220
- Chain B: S.60, G.64, A.126, W.130, T.147, A.150, F.151, A.154, A.274, T.278
- Ligands: BCL.5, BCL.8
8 PLIP interactions:3 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:F.182, A:A.185, A:A.189, B:A.150, B:F.151, B:F.151, B:T.278
- pi-Stacking: B:F.151
BPH.44: 23 residues within 4Å:- Chain T: A.94, F.98, W.101, E.105, I.118, A.121, F.122, A.125, Y.149, G.150, S.238, L.239, V.242
- Chain U: Y.211, A.214, L.215, A.218, M.219, W.253, M.257
- Ligands: BCL.43, BCL.48, U10.51
9 PLIP interactions:7 interactions with chain T, 2 interactions with chain U- Hydrophobic interactions: T:A.94, T:A.121, T:F.122, T:F.122, T:Y.149, T:L.239, T:V.242, U:A.214, U:A.218
BPH.47: 18 residues within 4Å:- Chain T: F.182, A.185, L.186, A.189, L.190, L.220
- Chain U: S.60, G.64, A.126, W.130, T.147, A.150, F.151, A.154, A.274, T.278
- Ligands: BCL.46, BCL.50
9 PLIP interactions:4 interactions with chain T, 5 interactions with chain U- Hydrophobic interactions: T:F.182, T:A.185, T:A.189, T:L.190, U:A.150, U:F.151, U:F.151, U:T.278
- pi-Stacking: U:F.151
- 4 x U10: UBIQUINONE-10(Non-covalent)
U10.4: 18 residues within 4Å:- Chain A: S.179, F.180, T.183, L.190, H.191, L.194, V.195, P.210, E.213, D.214, F.217, Y.223, S.224, I.225, G.226, T.227, I.230
- Ligands: BCL.5
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:F.180, A:L.190, A:L.194, A:V.195, A:F.217, A:F.217, A:I.225, A:I.225, A:I.230, A:I.230, A:I.230
- Hydrogen bonds: A:D.214
U10.9: 23 residues within 4Å:- Chain A: V.27, F.30, V.32, G.36, F.40, W.101
- Chain B: M.219, H.220, T.223, A.249, W.253, M.257, F.259, N.260, A.261, T.262, M.263, I.266, W.269
- Ligands: BCL.2, BPH.3, PC1.11, PC1.13
14 PLIP interactions:4 interactions with chain A, 10 interactions with chain B- Hydrophobic interactions: A:V.27, A:F.30, A:V.32, A:F.40, B:M.219, B:W.253, B:F.259, B:A.261, B:I.266, B:W.269, B:W.269
- Hydrogen bonds: B:T.223, B:A.261
- pi-Stacking: B:W.253
U10.45: 29 residues within 4Å:- Chain T: F.120, F.124, I.176, S.179, F.180, T.183, L.186, A.187, L.190, H.191, L.194, E.213, D.214, F.217, V.221, Y.223, S.224, I.225, G.226, T.227, I.230, L.233, L.236, L.239, S.240, F.243, F.244
- Chain U: I.7
- Ligands: BCL.46
20 PLIP interactions:18 interactions with chain T, 2 interactions with chain U- Hydrophobic interactions: T:F.124, T:F.180, T:F.180, T:L.186, T:A.187, T:L.190, T:F.217, T:F.217, T:F.217, T:V.221, T:I.225, T:I.230, T:L.239, T:F.243, T:F.243, T:F.244, U:I.7, U:I.7
- Hydrogen bonds: T:I.225, T:G.226
U10.51: 23 residues within 4Å:- Chain T: V.27, F.30, V.32, G.36, V.37, F.40, W.101
- Chain U: M.219, H.220, T.223, A.249, W.253, M.257, F.259, N.260, A.261, T.262, M.263, I.266, W.269
- Ligands: BPH.44, BCL.48, PC1.54
15 PLIP interactions:10 interactions with chain U, 5 interactions with chain T- Hydrophobic interactions: U:M.219, U:W.253, U:F.259, U:A.261, U:I.266, U:W.269, U:W.269, T:V.27, T:F.30, T:F.30, T:V.37, T:F.40
- Hydrogen bonds: U:T.223, U:A.261
- pi-Stacking: U:W.253
- 2 x FE2: FE (II) ION(Non-covalent)
FE2.7: 5 residues within 4Å:- Chain A: H.191, H.231
- Chain B: H.220, E.235, H.267
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain B- Metal complexes: A:H.191, B:H.220, B:E.235, B:E.235, B:H.267
FE2.49: 5 residues within 4Å:- Chain T: H.191, H.231
- Chain U: H.220, E.235, H.267
5 PLIP interactions:3 interactions with chain U, 2 interactions with chain T- Metal complexes: U:H.220, U:E.235, U:H.267, T:H.191, T:H.231
- 36 x SPO: SPHEROIDENE(Non-covalent)
SPO.10: 22 residues within 4Å:- Chain B: W.67, F.68, I.71, G.72, F.75, W.76, F.86, F.106, L.117, S.120, M.123, W.158, G.162, F.163, W.172, V.176, Y.178, G.179, I.180, H.183
- Chain N: M.30
- Ligands: BCL.5
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:W.67, B:F.68, B:F.68, B:F.68, B:I.71, B:F.75, B:F.86, B:F.106, B:F.106, B:F.163, B:W.172, B:V.176, B:V.176, B:I.180
SPO.18: 22 residues within 4Å:- Chain E: L.7
- Chain F: Q.20, F.23, L.24, L.27, M.30, I.31, I.34
- Chain G: E.19, L.20, V.23, Y.24, G.27, L.28
- Chain H: A.28, H.32, L.36
- Ligands: BCL.17, BCL.19, SPO.20, BCL.21, SPO.25
15 PLIP interactions:5 interactions with chain F, 2 interactions with chain H, 1 interactions with chain E, 7 interactions with chain G- Hydrophobic interactions: F:F.23, F:L.24, F:L.24, F:I.31, F:I.34, H:A.28, H:H.32, E:L.7, G:E.19, G:L.20, G:L.20, G:V.23, G:L.28, G:L.28, G:L.28
SPO.20: 14 residues within 4Å:- Chain E: Y.43, F.49
- Chain F: F.17, G.21
- Chain G: F.31, V.34, A.38, A.41, V.42, W.45
- Ligands: BCL.16, BCL.17, SPO.18, SPO.34
9 PLIP interactions:4 interactions with chain G, 5 interactions with chain E- Hydrophobic interactions: G:F.31, G:V.34, G:A.38, G:A.41, E:F.49, E:F.49, E:F.49, E:F.49
- Hydrogen bonds: E:Y.43
SPO.22: 21 residues within 4Å:- Chain F: K.6, I.7, I.10
- Chain G: L.7
- Chain H: Q.20, F.23, L.24, L.27, M.30, I.31, I.34
- Chain I: L.20, V.23, Y.24, L.28
- Chain J: F.25, A.28
- Ligands: BCL.21, BCL.24, SPO.25, BCL.27
14 PLIP interactions:5 interactions with chain I, 5 interactions with chain H, 2 interactions with chain J, 2 interactions with chain F- Hydrophobic interactions: I:L.20, I:L.20, I:V.23, I:Y.24, I:Y.24, H:F.23, H:L.24, H:L.24, H:I.31, H:I.34, J:F.25, J:A.28, F:I.7, F:I.10
SPO.23: 19 residues within 4Å:- Chain H: K.6, I.7, I.10
- Chain J: Q.20, F.23, L.24, L.27, M.30, I.31, I.34
- Chain K: L.20, Y.24, L.28
- Chain L: H.32, L.36
- Ligands: SPO.26, BCL.27, BCL.28, BCL.30
14 PLIP interactions:1 interactions with chain L, 5 interactions with chain J, 4 interactions with chain H, 4 interactions with chain K- Hydrophobic interactions: L:H.32, J:F.23, J:L.24, J:L.24, J:I.31, J:I.34, H:K.6, H:K.6, H:I.7, H:I.10, K:L.20, K:Y.24, K:L.28, K:L.28
SPO.25: 13 residues within 4Å:- Chain G: Y.43, F.49
- Chain H: G.21
- Chain I: F.31, V.34, A.38, A.41, V.42, W.45
- Ligands: SPO.18, BCL.19, BCL.21, SPO.22
10 PLIP interactions:7 interactions with chain I, 3 interactions with chain G- Hydrophobic interactions: I:F.31, I:V.34, I:A.38, I:A.41, I:V.42, I:W.45, I:W.45, G:F.49, G:F.49, G:F.49
SPO.26: 12 residues within 4Å:- Chain I: F.49
- Chain J: G.21, K.50
- Chain K: F.31, V.34, A.38, A.41, V.42, W.45
- Ligands: SPO.23, BCL.24, BCL.27
5 PLIP interactions:4 interactions with chain K, 1 interactions with chain I- Hydrophobic interactions: K:F.31, K:V.34, K:V.34, K:V.42, I:F.49
SPO.29: 10 residues within 4Å:- Chain K: Y.43, F.49
- Chain L: Q.20
- Chain M: F.31, V.34, A.41, V.42, W.45
- Ligands: BCL.28, BCL.30
7 PLIP interactions:4 interactions with chain M, 3 interactions with chain K- Hydrophobic interactions: M:F.31, M:V.34, M:V.42, M:W.45, K:F.49, K:F.49, K:F.49
SPO.34: 25 residues within 4Å:- Chain D: F.17, Q.20, F.23, L.24, L.27, M.30, I.34
- Chain E: L.20, V.23, Y.24, G.27, L.28, F.31
- Chain F: H.32
- Chain Q: F.4, K.6, I.7, M.9, I.10
- Chain R: L.7
- Ligands: BCL.14, BCL.16, BCL.17, SPO.20, SPO.37
15 PLIP interactions:4 interactions with chain E, 5 interactions with chain D, 4 interactions with chain Q, 1 interactions with chain R, 1 interactions with chain F- Hydrophobic interactions: E:L.20, E:V.23, E:L.28, E:F.31, D:F.17, D:F.23, D:F.23, D:L.24, D:L.27, Q:K.6, Q:I.7, Q:I.7, Q:M.9, R:L.7, F:H.32
SPO.36: 26 residues within 4Å:- Chain D: F.25, A.28, V.29, H.32, L.33, L.36
- Chain O: I.7, I.10
- Chain P: L.7
- Chain Q: Q.20, F.23, L.24, L.27, M.30, I.31, I.34
- Chain R: L.20, V.23, Y.24, G.27, L.28
- Ligands: BCL.14, BCL.35, SPO.37, BCL.38, SPO.39
13 PLIP interactions:2 interactions with chain R, 5 interactions with chain Q, 3 interactions with chain D, 2 interactions with chain O, 1 interactions with chain P- Hydrophobic interactions: R:L.20, R:V.23, Q:F.23, Q:L.24, Q:L.24, Q:I.31, Q:I.34, D:F.25, D:A.28, D:H.32, O:I.7, O:I.10, P:L.7
SPO.37: 14 residues within 4Å:- Chain D: F.17, Q.20, G.21
- Chain E: V.34, A.38, A.41, V.42, W.45
- Chain R: Y.43, F.49
- Ligands: BCL.14, SPO.34, SPO.36, BCL.38
7 PLIP interactions:5 interactions with chain E, 2 interactions with chain R- Hydrophobic interactions: E:V.34, E:A.38, E:A.41, E:V.42, E:W.45, R:F.49, R:F.49
SPO.39: 10 residues within 4Å:- Chain P: F.49
- Chain Q: Q.20
- Chain R: V.34, A.38, A.41, V.42, W.45
- Ligands: BCL.33, BCL.35, SPO.36
7 PLIP interactions:6 interactions with chain R, 1 interactions with chain P- Hydrophobic interactions: R:V.34, R:A.38, R:A.41, R:W.45, R:W.45, R:W.45, P:F.49
SPO.42: 27 residues within 4Å:- Chain O: Q.20, F.23, L.24, L.27, M.30, I.31, I.34
- Chain P: V.23, Y.24, G.27, L.28
- Chain Q: F.25, A.28, V.29, H.32, L.33, L.36
- Chain S: L.19, R.20, W.22, V.23, A.24, M.27
- Ligands: BCL.33, BCL.35
- Chain o: F.7, H.10
16 PLIP interactions:3 interactions with chain Q, 6 interactions with chain S, 1 interactions with chain o, 5 interactions with chain O, 1 interactions with chain P- Hydrophobic interactions: Q:A.28, Q:V.29, Q:V.29, S:L.19, S:L.19, S:W.22, S:V.23, S:V.23, S:A.24, o:F.7, O:F.23, O:L.24, O:L.24, O:I.31, O:I.34, P:V.23
SPO.52: 22 residues within 4Å:- Chain 8: L.33
- Chain U: W.67, F.68, I.71, G.72, F.75, W.76, F.86, F.106, L.117, S.120, M.123, W.158, G.162, F.163, W.172, V.176, Y.178, G.179, I.180, H.183
- Ligands: BCL.46
15 PLIP interactions:1 interactions with chain 8, 14 interactions with chain U- Hydrophobic interactions: 8:L.33, U:W.67, U:F.68, U:F.68, U:F.68, U:I.71, U:F.75, U:F.86, U:F.106, U:F.106, U:F.163, U:W.172, U:V.176, U:V.176, U:I.180
SPO.57: 26 residues within 4Å:- Chain W: F.17, Q.20, F.23, L.24, L.27, M.30, I.34
- Chain X: E.19, L.20, V.23, Y.24, G.27, L.28, F.31
- Chain Y: F.25, A.28, V.29, H.32, L.33, L.36
- Ligands: BCL.55, BCL.58, BCL.60, SPO.62
- Chain m: K.6
- Chain n: L.7
18 PLIP interactions:1 interactions with chain m, 5 interactions with chain W, 8 interactions with chain X, 3 interactions with chain Y, 1 interactions with chain n- Hydrophobic interactions: m:K.6, W:F.17, W:F.23, W:F.23, W:L.24, W:L.27, X:L.20, X:L.20, X:V.23, X:Y.24, X:Y.24, X:L.28, X:L.28, X:F.31, Y:F.25, Y:A.28, Y:L.33, n:L.7
SPO.59: 12 residues within 4Å:- Chain W: F.17, Q.20, K.50
- Chain X: V.34, A.38, A.41, V.42, W.45
- Ligands: BCL.55, SPO.103, BCL.104
- Chain n: F.49
9 PLIP interactions:2 interactions with chain W, 5 interactions with chain X, 2 interactions with chain n- Hydrophobic interactions: W:F.17, X:V.34, X:A.38, X:A.41, X:V.42, X:W.45, n:F.49, n:F.49
- Hydrogen bonds: W:K.50
SPO.61: 26 residues within 4Å:- Chain 0: F.25, A.28, V.29, H.32, L.33, L.36
- Chain W: F.4, K.6, I.7
- Chain X: L.7
- Chain Y: Q.20, F.23, L.24, L.27, M.30, I.31, I.34
- Chain Z: E.19, L.20, V.23, Y.24, G.27, L.28
- Ligands: BCL.60, SPO.62, BCL.65
23 PLIP interactions:4 interactions with chain 0, 10 interactions with chain Z, 1 interactions with chain X, 5 interactions with chain Y, 3 interactions with chain W- Hydrophobic interactions: 0:F.25, 0:A.28, 0:V.29, 0:V.29, Z:E.19, Z:L.20, Z:L.20, Z:L.20, Z:V.23, Z:V.23, Z:Y.24, Z:Y.24, Z:L.28, Z:L.28, X:L.7, Y:F.23, Y:L.24, Y:L.24, Y:I.31, Y:I.34, W:F.4, W:K.6, W:K.6
SPO.62: 15 residues within 4Å:- Chain W: F.11
- Chain X: F.49
- Chain Y: F.17, Q.20, G.21
- Chain Z: F.31, V.34, A.38, A.41, V.42, W.45
- Ligands: SPO.57, BCL.58, BCL.60, SPO.61
10 PLIP interactions:1 interactions with chain Y, 5 interactions with chain Z, 1 interactions with chain W, 3 interactions with chain X- Hydrophobic interactions: Y:F.17, Z:F.31, Z:A.38, Z:A.41, Z:V.42, Z:W.45, W:F.11, X:F.49, X:F.49, X:F.49
SPO.64: 11 residues within 4Å:- Chain 0: F.17, G.21
- Chain 1: F.31, V.34, A.38, A.41, V.42, W.45
- Chain Z: F.49
- Ligands: BCL.63, BCL.65
10 PLIP interactions:7 interactions with chain 1, 3 interactions with chain Z- Hydrophobic interactions: 1:F.31, 1:V.34, 1:A.38, 1:A.41, 1:V.42, 1:W.45, 1:W.45, Z:F.49, Z:F.49, Z:F.49
SPO.66: 23 residues within 4Å:- Chain 0: F.4, K.6, I.7
- Chain 1: L.7
- Chain 2: Q.20, F.23, L.24, L.27, M.30, I.31, I.34
- Chain 3: E.19, L.20, V.23, Y.24, G.27, L.28
- Chain 4: L.36, W.43
- Ligands: BCL.69, BCL.70, BCL.73, SPO.75
21 PLIP interactions:12 interactions with chain 3, 3 interactions with chain 0, 5 interactions with chain 2, 1 interactions with chain 1- Hydrophobic interactions: 3:E.19, 3:L.20, 3:L.20, 3:L.20, 3:V.23, 3:V.23, 3:Y.24, 3:Y.24, 3:Y.24, 3:L.28, 3:L.28, 3:L.28, 0:F.4, 0:K.6, 0:K.6, 2:F.23, 2:L.24, 2:L.24, 2:I.31, 2:I.34, 1:L.7
SPO.67: 22 residues within 4Å:- Chain 0: Q.20, F.23, L.24, L.27, M.30, I.31, I.34
- Chain 1: E.19, L.20, V.23, Y.24, G.27, L.28
- Chain 2: F.25, V.29, L.36
- Chain Y: F.4, K.6
- Ligands: BCL.65, BCL.68, BCL.69, SPO.72
18 PLIP interactions:11 interactions with chain 1, 5 interactions with chain 0, 1 interactions with chain 2, 1 interactions with chain Y- Hydrophobic interactions: 1:E.19, 1:L.20, 1:L.20, 1:L.20, 1:V.23, 1:V.23, 1:Y.24, 1:Y.24, 1:L.28, 1:L.28, 1:L.28, 0:F.23, 0:L.24, 0:L.24, 0:I.31, 0:I.34, 2:V.29, Y:F.4
SPO.71: 19 residues within 4Å:- Chain 2: F.4, K.6
- Chain 4: Q.20, F.23, L.24, L.27, M.30, I.31, I.34
- Chain 5: L.20, Y.24, L.28
- Chain 6: F.25, V.29, L.36
- Ligands: BCL.74, SPO.75, BCL.76, SPO.79
15 PLIP interactions:5 interactions with chain 4, 5 interactions with chain 5, 2 interactions with chain 6, 3 interactions with chain 2- Hydrophobic interactions: 4:F.23, 4:L.24, 4:L.24, 4:I.31, 4:I.34, 5:L.20, 5:L.20, 5:L.20, 5:Y.24, 5:L.28, 6:F.25, 6:V.29, 2:F.4, 2:K.6, 2:K.6
SPO.72: 12 residues within 4Å:- Chain 1: Y.43, F.49
- Chain 2: F.17, Q.20, G.21
- Chain 3: V.34, A.38, A.41, W.45
- Ligands: SPO.67, BCL.68, BCL.69
7 PLIP interactions:4 interactions with chain 3, 3 interactions with chain 1- Hydrophobic interactions: 3:V.34, 3:A.38, 3:A.41, 3:W.45, 1:F.49, 1:F.49, 1:F.49
SPO.75: 12 residues within 4Å:- Chain 3: Y.43, F.49
- Chain 4: G.21
- Chain 5: V.34, A.38, A.41, V.42, W.45
- Ligands: SPO.66, BCL.70, SPO.71, BCL.73
7 PLIP interactions:4 interactions with chain 5, 3 interactions with chain 3- Hydrophobic interactions: 5:V.34, 5:A.41, 5:V.42, 5:W.45, 3:F.49, 3:F.49, 3:F.49
SPO.77: 21 residues within 4Å:- Chain 4: F.4, K.6
- Chain 6: Q.20, F.23, L.24, L.27, M.30, I.31, I.34
- Chain 7: L.20, Y.24, L.28
- Chain 8: F.25, A.28, H.32, L.36
- Ligands: BCL.76, BCL.78, SPO.79, SPO.80, BCL.81
16 PLIP interactions:5 interactions with chain 6, 3 interactions with chain 8, 3 interactions with chain 4, 5 interactions with chain 7- Hydrophobic interactions: 6:F.23, 6:L.24, 6:L.24, 6:I.31, 6:I.34, 8:F.25, 8:A.28, 8:H.32, 4:F.4, 4:K.6, 4:K.6, 7:L.20, 7:L.20, 7:L.20, 7:Y.24, 7:L.28
SPO.79: 10 residues within 4Å:- Chain 5: F.49
- Chain 6: F.17
- Chain 7: A.38, A.41, V.42, W.45
- Ligands: SPO.71, BCL.74, BCL.76, SPO.77
5 PLIP interactions:3 interactions with chain 7, 2 interactions with chain 5- Hydrophobic interactions: 7:A.38, 7:A.41, 7:W.45, 5:F.49, 5:F.49
SPO.80: 10 residues within 4Å:- Chain 7: F.49
- Chain 8: K.50, Y.51
- Chain 9: A.38, A.41, V.42, W.45
- Ligands: SPO.77, BCL.78, BCL.81
7 PLIP interactions:1 interactions with chain 8, 4 interactions with chain 9, 2 interactions with chain 7- Hydrogen bonds: 8:Y.51
- Hydrophobic interactions: 9:A.38, 9:V.42, 9:W.45, 9:W.45, 7:F.49, 7:F.49
SPO.82: 19 residues within 4Å:- Chain 6: K.6, I.7
- Chain 8: Q.20, F.23, L.24, L.27, M.30, I.31, I.34
- Chain 9: L.20, Y.24
- Ligands: BCL.81, BCL.83, BCL.84, SPO.88
- Chain a: F.25, A.28, H.32, L.36
13 PLIP interactions:5 interactions with chain 8, 3 interactions with chain a, 5 interactions with chain 9- Hydrophobic interactions: 8:F.23, 8:L.24, 8:L.24, 8:I.31, 8:I.34, a:F.25, a:A.28, a:H.32, 9:L.20, 9:L.20, 9:L.20, 9:L.20, 9:Y.24
SPO.85: 25 residues within 4Å:- Chain 8: K.6, I.7, I.10
- Ligands: BCL.83, BCL.86, BCL.87, SPO.88, SPO.91
- Chain a: Q.20, F.23, L.24, L.27, M.30, I.31, I.34
- Chain b: E.19, L.20, V.23, Y.24, L.28
- Chain c: F.25, A.28, V.29, H.32, L.36
15 PLIP interactions:6 interactions with chain b, 3 interactions with chain c, 5 interactions with chain a, 1 interactions with chain 8- Hydrophobic interactions: b:E.19, b:L.20, b:L.20, b:V.23, b:Y.24, b:L.28, c:A.28, c:V.29, c:H.32, a:F.23, a:L.24, a:L.24, a:I.31, a:I.34, 8:I.7
SPO.88: 10 residues within 4Å:- Chain 9: F.49
- Ligands: SPO.82, BCL.83, BCL.84, SPO.85
- Chain b: V.34, A.38, A.41, I.44, W.45
4 PLIP interactions:4 interactions with chain b- Hydrophobic interactions: b:V.34, b:A.38, b:A.41, b:W.45
SPO.89: 19 residues within 4Å:- Ligands: BCL.86, BCL.90, SPO.91, BCL.92
- Chain a: K.6, I.7, I.10
- Chain c: Q.20, F.23, L.24, L.27, M.30, I.31, I.34
- Chain d: L.20, Y.24
- Chain e: A.28, H.32, L.36
9 PLIP interactions:2 interactions with chain e, 1 interactions with chain a, 5 interactions with chain c, 1 interactions with chain d- Hydrophobic interactions: e:A.28, e:H.32, a:I.7, c:F.23, c:L.24, c:L.24, c:I.31, c:I.34, d:L.20
SPO.91: 12 residues within 4Å:- Ligands: SPO.85, BCL.86, BCL.87, SPO.89
- Chain b: Y.43, F.49
- Chain d: F.31, V.34, A.38, A.41, V.42, W.45
8 PLIP interactions:6 interactions with chain d, 2 interactions with chain b- Hydrophobic interactions: d:F.31, d:V.34, d:A.38, d:A.41, d:V.42, d:W.45, b:F.49
- Hydrogen bonds: b:Y.43
SPO.93: 8 residues within 4Å:- Ligands: BCL.90, BCL.92
- Chain d: F.49
- Chain e: Q.20, K.50
- Chain f: F.31, A.38, V.42
4 PLIP interactions:3 interactions with chain f, 1 interactions with chain d- Hydrophobic interactions: f:F.31, f:A.38, f:V.42, d:F.49
SPO.99: 25 residues within 4Å:- Chain S: F.7
- Ligands: BCL.100, BCL.102, SPO.105
- Chain k: Q.20, F.23, L.24, L.27, M.30, I.31, I.34
- Chain l: E.19, L.20, V.23, Y.24, G.27, L.28
- Chain m: F.25, A.28, V.29, H.32, L.33
- Chain o: L.19, V.23, M.27
20 PLIP interactions:5 interactions with chain k, 6 interactions with chain l, 2 interactions with chain S, 3 interactions with chain m, 4 interactions with chain o- Hydrophobic interactions: k:F.23, k:L.24, k:L.24, k:I.31, k:I.34, l:E.19, l:V.23, l:Y.24, l:Y.24, l:L.28, l:L.28, S:F.7, S:F.7, m:F.25, m:A.28, m:V.29, o:L.19, o:L.19, o:V.23, o:V.23
SPO.103: 24 residues within 4Å:- Chain W: F.25, A.28, V.29, H.32, L.33, L.36
- Ligands: BCL.55, SPO.59, SPO.105
- Chain k: I.7, I.10
- Chain l: L.7
- Chain m: Q.20, F.23, L.24, L.27, M.30, I.31, I.34
- Chain n: E.19, L.20, V.23, Y.24, L.28
17 PLIP interactions:8 interactions with chain n, 5 interactions with chain m, 2 interactions with chain k, 1 interactions with chain l, 1 interactions with chain W- Hydrophobic interactions: n:E.19, n:L.20, n:L.20, n:L.20, n:V.23, n:Y.24, n:Y.24, n:L.28, m:F.23, m:L.24, m:L.24, m:I.31, m:I.34, k:I.7, k:I.10, l:L.7, W:A.28
SPO.105: 12 residues within 4Å:- Ligands: SPO.99, BCL.100, BCL.102, SPO.103
- Chain l: F.49
- Chain m: G.21, K.50
- Chain n: F.31, V.34, A.38, V.42, W.45
6 PLIP interactions:1 interactions with chain l, 5 interactions with chain n- Hydrophobic interactions: l:F.49, n:V.34, n:A.38, n:V.42, n:W.45, n:W.45
- 9 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
PC1.11: 17 residues within 4Å:- Chain A: F.30
- Chain B: F.209, M.257, G.258, F.259, W.269, M.273
- Chain C: L.24, I.28, L.31, Q.32, M.36, Y.40, F.56
- Ligands: BCL.2, U10.9, PC1.13
8 PLIP interactions:5 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: B:F.209, B:F.259, B:F.259, B:W.269, B:W.269, C:L.24, C:I.28, C:L.31
PC1.12: 17 residues within 4Å:- Chain A: I.50, P.62, Q.63, Y.149, I.151, W.152
- Chain B: P.201, G.204, L.205, H.302, M.304
- Chain C: N.9, S.14, I.17, Y.18, W.21
- Ligands: BCL.2
12 PLIP interactions:5 interactions with chain A, 4 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: A:I.50, A:P.62, A:I.151, A:I.151, B:P.201, B:L.205, B:L.205, C:W.21
- Hydrogen bonds: A:Q.63, C:N.9, C:S.14
- Salt bridges: B:H.302
PC1.13: 16 residues within 4Å:- Chain A: G.28, P.29, F.30, F.40, I.47
- Chain C: L.42, N.52, Q.53, G.54, P.55
- Chain D: R.15
- Ligands: BCL.1, BPH.3, U10.9, PC1.11, PC1.15
5 PLIP interactions:3 interactions with chain A, 1 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: A:F.30, A:F.40, A:I.47, C:P.55
- Salt bridges: D:R.15
PC1.15: 18 residues within 4Å:- Chain A: F.40, A.44
- Chain C: N.52, Q.53, G.54, P.55
- Chain D: F.11, R.15, V.16, A.19, V.22, F.25
- Chain F: R.14, R.15, V.18, F.25
- Ligands: PC1.13, BCL.17
5 PLIP interactions:3 interactions with chain D, 1 interactions with chain F, 1 interactions with chain A- Hydrophobic interactions: D:V.22, D:F.25, F:F.25, A:A.44
- Salt bridges: D:R.15
PC1.40: 19 residues within 4Å:- Chain A: L.76, Q.88, T.91, I.92, T.95, L.134, G.141, W.143
- Chain S: F.39, L.42, R.49, R.53
- Ligands: BCL.41, BCL.107
- Chain l: V.34, A.38, V.42, I.44, W.45
14 PLIP interactions:6 interactions with chain A, 5 interactions with chain S, 3 interactions with chain l- Hydrophobic interactions: A:L.76, A:T.91, A:I.92, A:L.134, A:L.134, S:F.39, S:F.39, S:L.42, S:L.42, l:V.34, l:A.38, l:V.42
- Hydrogen bonds: A:L.76
- Salt bridges: S:R.53
PC1.54: 17 residues within 4Å:- Chain T: F.30
- Chain U: F.209, M.257, G.258, F.259, W.269, W.272, M.273
- Chain V: L.24, I.28, L.31, Q.32, M.36, Y.40, F.56
- Ligands: BCL.48, U10.51
8 PLIP interactions:3 interactions with chain V, 5 interactions with chain U- Hydrophobic interactions: V:L.24, V:I.28, V:L.31, U:F.209, U:W.269, U:W.269, U:W.272, U:M.273
PC1.56: 16 residues within 4Å:- Chain V: N.52, Q.53, G.54, P.55
- Chain W: F.11, R.15, V.16, A.19
- Chain Y: R.14, R.15, F.17, V.18, G.21, V.22, F.25
- Ligands: PC1.101
3 PLIP interactions:1 interactions with chain W, 2 interactions with chain Y- Salt bridges: W:R.15
- Hydrophobic interactions: Y:V.18, Y:F.25
PC1.101: 25 residues within 4Å:- Chain T: A.2, V.27, G.28, F.40, A.44
- Chain V: N.52, E.94
- Chain W: D.12, R.14, R.15, V.18, A.19, G.21, V.22, F.23, F.25, L.26, L.27
- Chain Y: F.25
- Ligands: BCL.55, PC1.56
- Chain m: F.11, R.15, V.16, F.23
20 PLIP interactions:3 interactions with chain T, 3 interactions with chain m, 11 interactions with chain W, 1 interactions with chain V, 2 interactions with chain Y- Hydrophobic interactions: T:F.40, T:A.44, m:F.23, W:V.18, W:V.18, W:A.19, W:F.23, W:F.23, W:F.25, W:F.25, W:L.26, W:L.26, Y:F.25, Y:F.25
- Hydrogen bonds: T:G.28, V:E.94
- Salt bridges: m:R.15, m:R.15, W:D.12, W:R.15
PC1.106: 17 residues within 4Å:- Chain P: A.41, V.42, I.44, W.45
- Chain T: G.75, L.76, T.91, I.92, G.141, W.143
- Chain k: L.33
- Chain o: T.41, L.42, I.45, G.46, R.49, R.53
13 PLIP interactions:4 interactions with chain o, 1 interactions with chain k, 3 interactions with chain P, 5 interactions with chain T- Hydrophobic interactions: o:L.42, o:I.45, k:L.33, P:V.42, P:I.44, P:W.45, T:L.76, T:I.92, T:W.143, T:W.143
- Hydrogen bonds: o:R.49, T:L.76
- Salt bridges: o:R.53
- 1 x CDL: CARDIOLIPIN(Non-covalent)
CDL.53: 18 residues within 4Å:- Chain 2: V.22, F.25
- Chain T: N.200, P.201
- Chain U: K.145, H.146, W.149, L.152, W.156, M.159, R.268, I.271, W.272, V.275, L.279
- Chain V: F.23, L.27, Y.30
21 PLIP interactions:1 interactions with chain T, 3 interactions with chain V, 15 interactions with chain U, 2 interactions with chain 2- Hydrogen bonds: T:N.200, U:K.145
- Hydrophobic interactions: V:F.23, V:L.27, V:Y.30, U:W.149, U:W.149, U:L.152, U:W.156, U:W.156, U:I.271, U:V.275, U:V.275, U:L.279, U:L.279, 2:V.22, 2:F.25
- Salt bridges: U:H.146, U:H.146, U:H.146, U:R.268
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cao, P. et al., Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex. Nat Commun (2022)
- Release Date
- 2022-05-04
- Peptides
- Reaction center protein L chain: AT
Reaction center protein M chain: BU
Reaction center protein H chain: CV
Light-harvesting protein B-875 alpha chain: DFHJLNOQWY02468acegikm
Light-harvesting protein B-875 beta chain: EGIKMPRXZ13579bdfhjln
Intrinsic membrane protein PufX: So - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LT
lB
MU
mC
HV
hD
AF
DH
FJ
IL
KN
OO
7Q
9W
aY
d0
f2
i4
k6
o8
qa
sc
ue
wg
yi
5k
6m
QE
BG
EI
GK
JM
NP
8R
0X
bZ
e1
g3
j5
n7
p9
rb
td
vf
xh
zj
4l
aan
abS
Co
c - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 7vb9.1
Rba sphaeroides PufY-KO RC-LH1 dimer type-2
Reaction center protein L chain
Reaction center protein M chain
Toggle Identical (BU)Reaction center protein H chain
Toggle Identical (CV)Light-harvesting protein B-875 alpha chain
Toggle Identical (DFHJQWY02468acm) Toggle Identical (Ne) Toggle Identical (Ok) Toggle Identical (gi)Light-harvesting protein B-875 beta chain
Toggle Identical (EIPRX1ln) Toggle Identical (GKZ39) Toggle Identical (bf)Intrinsic membrane protein PufX
Related Entries With Identical Sequence
1e14.1 | 1e6d.1 | 1f6n.1 | 1fnp.1 | 1fnq.1 | 1jgw.1 | 1jgx.1 | 1jgy.1 | 1jgz.1 | 1jh0.1 | 1k6l.1 | 1k6n.1 | 1kby.1 | 1l9b.1 | 1l9j.1 | 1l9j.2 | 1m3x.1 | 1mps.1 | 1pcr.1 | 1qov.1 | 1rg5.1 | 1rgn.1 | 1rqk.1 | 1ry5.1 | 1rzh.1 | 1rzz.1 | 1rzz.2 | 1s00.1 | 1s00.2 | 1umx.1 more...less...1yf6.1 | 1yst.1 | 1z9j.1 | 1z9k.1 | 1z9k.2 | 2bnp.1 | 2bns.1 | 2boz.1 | 2gmr.1 | 2hg3.1 | 2hg9.1 | 2hh1.1 | 2hhk.1 | 2hit.1 | 2hj6.1 | 2j8c.1 | 2j8d.1 | 2jiy.1 | 2jj0.1 | 2nrg.1 | 2rcr.1 | 2uws.1 | 2uwt.1 | 2uwu.1 | 2uwv.1 | 2uww.1 | 2ux3.1 | 2ux4.1 | 2ux5.1 | 2uxj.1 | 2uxk.1 | 2uxl.1 | 2uxm.1 | 2wx5.1 | 3dsy.1 | 3dta.1 | 3dtr.1 | 3dts.1 | 3du2.1 | 3du3.1 | 3duq.1 | 3i4d.1 | 3zum.1 | 3zuw.1 | 4h99.1 | 4h9l.1 | 4hbh.1 | 4hbj.1 | 4in5.1 | 4in7.1 | 4lwy.1 | 4rcr.1 | 4v9g.1 | 4v9g.2 | 4v9g.3 | 4v9g.4 | 4v9g.5 | 4v9g.6 | 4v9g.7 | 4v9g.8 | 4v9g.9 | 4v9g.10 | 4v9g.11 | 4v9g.12 | 4v9g.13 | 4v9g.14 | 4v9g.15 | 4v9g.16 | 4v9g.17 | 4v9g.18 | 4v9g.19 | 4v9g.20 | 4v9g.21 | 4v9g.22 | 4v9g.23 | 4v9g.24 | 4v9g.25 | 4v9g.26 | 4v9g.27 | 4v9g.28 | 4v9g.29 | 4v9g.30 | 4v9g.31 | 4v9g.32 | 4v9g.33 | 4v9g.34 | 4v9g.35 | 4v9g.36 | 4v9g.37 | 4v9g.38 | 4v9g.39 | 4v9g.40 | 4v9g.41 | 4v9g.42 | 4v9g.43 | 4v9g.44 | 4v9g.45 | 4v9g.46 | 4v9g.47 | 4v9g.48 | 4v9g.49 | 4v9g.50 | 4v9g.51 | 4v9g.52 | 4v9g.53 | 4v9g.54 | 4v9g.55 | 4v9g.56 | 4v9g.57 | 4v9g.58 | 4v9g.59 | 4v9g.60 | 4v9g.61 | 4v9g.62 | 4v9g.63 | 4v9g.64 | 5lri.1 | 5lse.1 | 7f0l.1 | 7mh3.1 | 7mh4.1 | 7mh5.1 | 7mh8.1 | 7mh9.1 | 7mha.1 | 7pqd.1 | 7pqd.2 | 7pqd.3 | 7pqd.4 | 7pqd.5 | 7pqd.6 | 7pqd.7 | 7pqd.8 | 7pqd.9 | 7pqd.10 | 7pqd.11 | 7pqd.12 | 7pqd.13 | 7pqd.14 | 7pqd.15 | 7pqd.16 | 7pqd.17 | 7pqd.18 | 7pqd.19 | 7pqd.20 | 7pqd.21 | 7pqd.22 | 7pqd.23 | 7pqd.24 | 7pqd.25 | 7pqd.26 | 7pqd.27 | 7pqd.28 | 7pqd.36 | 7pqd.37 | 7pqd.38 | 7pqd.39 | 7pqd.40 | 7pqd.41 | 7pqd.42 | 7pqd.43 | 7pqd.44 | 7pqd.45 | 7pqd.46 | 7pqd.47 | 7pqd.48 | 7pqd.49 | 7pqd.50 | 7pqd.51 | 7pqd.52 | 7pqd.53 | 7pqd.54 | 7pqd.55 | 7pqd.56 | 7pqd.57 | 7pqd.58 | 7pqd.59 | 7pqd.60 | 7pqd.61 | 7pqd.62 | 7pqd.63 | 7va9.1 | 7va9.2 | 7va9.3 | 7va9.4 | 7va9.5 | 7va9.6 | 7va9.7 | 7va9.8 | 7va9.9 | 7va9.10 | 7va9.11 | 7va9.12 | 7va9.13 | 7va9.14 | 7va9.15 | 7va9.16 | 7va9.17 | 7va9.18 | 7va9.19 | 7va9.20 | 7va9.21 | 7va9.22 | 7va9.23 | 7va9.24 | 7va9.25 | 7va9.26 | 7va9.27 | 7va9.28 | 7va9.29 | 7va9.30 | 7va9.31 | 7va9.32 | 7va9.33 | 7va9.34 | 7va9.35 | 7va9.36 | 7va9.37 | 7va9.38 | 7va9.39 | 7va9.40 | 7va9.41 | 7va9.42 | 7va9.43 | 7va9.44 | 7va9.45 | 7va9.46 | 7va9.47 | 7va9.48 | 7va9.49 | 7va9.50 | 7va9.51 | 7va9.52 | 7va9.53 | 7va9.54 | 7va9.55 | 7va9.56 | 7va9.57 | 7va9.58 | 7va9.59 | 7va9.60 | 7va9.61 | 7va9.62 | 7va9.63 | 7va9.64 | 7vnm.1 | 7vny.1 | 7vor.1 | 7vor.2 | 7vor.3 | 7vor.4 | 7vor.5 | 7vor.6 | 7vor.7 | 7vor.8 | 7vor.9 | 7vor.10 | 7vor.11 | 7vor.12 | 7vor.13 | 7vor.14 | 7vor.15 | 7vor.16 | 7vor.17 | 7vor.18 | 7vor.19 | 7vor.20 | 7vor.21 | 7vor.22 | 7vor.23 | 7vor.24 | 7vor.25 | 7vor.26 | 7vor.27 | 7vor.28 | 7vor.29 | 7vor.30 | 7vor.31 | 7vor.32 | 7vor.34 | 7vor.35 | 7vor.36 | 7vor.37 | 7vor.38 | 7vor.39 | 7vor.40 | 7vor.41 | 7vor.42 | 7vor.43 | 7vor.44 | 7vor.45 | 7vor.46 | 7vor.47 | 7vor.48 | 7vor.49 | 7vor.50 | 7vor.51 | 7vor.52 | 7vor.53 | 7vor.54 | 7vor.55 | 7vor.56 | 7vor.57 | 7vor.58 | 7vor.59 | 7vor.60 | 7vor.61 | 7vor.62 | 7vor.63 | 7vor.64 | 7vor.65 | 7vot.1 | 7vot.2 | 7vot.3 | 7vot.4 | 7vot.5 | 7vot.6 | 7vot.7 | 7vot.8 | 7vot.9 | 7vot.10 | 7vot.11 | 7vot.12 | 7vot.13 | 7vot.14 | 7vot.15 | 7vot.16 | 7vot.17 | 7vot.18 | 7vot.19 | 7vot.20 | 7vot.21 | 7vot.22 | 7vot.23 | 7vot.24 | 7vot.25 | 7vot.26 | 7vot.27 | 7vot.28 | 7vot.29 | 7vot.30 | 7vot.31 | 7vot.32 | 7vot.34 | 7vot.35 | 7vot.36 | 7vot.37 | 7vot.38 | 7vot.39 | 7vot.40 | 7vot.41 | 7vot.42 | 7vot.43 | 7vot.44 | 7vot.45 | 7vot.46 | 7vot.47 | 7vot.48 | 7vot.49 | 7vot.50 | 7vot.51 | 7vot.52 | 7vot.53 | 7vot.54 | 7vot.55 | 7vot.56 | 7vot.57 | 7vot.58 | 7vot.59 | 7vot.60 | 7vot.61 | 7vot.62 | 7vot.63 | 7vot.64 | 7vot.65 | 7voy.1 | 8vtj.1