- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 5 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
BCL.2: 18 residues within 4Å:- Chain B: Y.129, L.132, F.147, I.151, H.154, L.155, V.158
- Chain C: F.198, G.204, I.207, A.208, Y.211, G.212, L.215
- Ligands: BPH.3, BCL.5, BCL.7, LDA.8
11 PLIP interactions:7 interactions with chain B, 4 interactions with chain C,- Hydrophobic interactions: B:Y.129, B:L.132, B:F.147, B:F.147, B:L.155, B:V.158, C:F.198, C:I.207, C:I.207, C:L.215
- Metal complexes: B:H.154
BCL.5: 27 residues within 4Å:- Chain B: F.98, A.125, I.126, A.128, Y.129, L.132, W.157, V.158, T.161, G.162, Y.163, N.167, F.168, H.169, H.174, A.177, I.178, F.181, S.245, A.246, C.248, M.249
- Chain C: Y.211
- Ligands: BCL.2, BPH.3, BCL.6, BCL.7
12 PLIP interactions:12 interactions with chain B,- Hydrophobic interactions: B:F.98, B:F.98, B:A.125, B:A.128, B:W.157, B:T.161, B:Y.163, B:F.168, B:A.177, B:I.178
- Hydrogen bonds: B:S.245
- Metal complexes: B:H.174
BCL.6: 18 residues within 4Å:- Chain B: H.169, M.175, I.178, S.179, T.183, L.186
- Chain C: M.123, W.158, L.161, V.176, I.180, H.183, L.184, T.187
- Ligands: BCL.5, BCL.7, BPH.13, SPO.15
7 PLIP interactions:4 interactions with chain C, 3 interactions with chain B,- Hydrophobic interactions: C:L.161, C:V.176, C:L.184, B:I.178, B:I.178, B:L.186
- Metal complexes: C:H.183
BCL.7: 27 residues within 4Å:- Chain B: V.158, Y.163, H.169, F.182
- Chain C: W.67, A.154, L.157, W.158, L.161, W.186, T.187, N.188, F.190, S.191, L.197, F.198, H.203, S.206, I.207, Y.211, V.277, G.281, I.285
- Ligands: BCL.2, BCL.5, BCL.6, BPH.13
15 PLIP interactions:1 interactions with chain B, 14 interactions with chain C,- Hydrophobic interactions: B:V.158, C:W.67, C:A.154, C:L.157, C:W.158, C:W.186, C:T.187, C:N.188, C:F.190, C:L.197, C:F.198, C:I.207, C:V.277
- Hydrogen bonds: C:S.206
- Metal complexes: C:H.203
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.3: 26 residues within 4Å:- Chain B: F.42, I.50, A.94, A.97, F.98, W.101, E.105, I.118, A.121, F.122, A.125, Y.149, H.154, L.239, V.242
- Chain C: Y.211, A.214, L.215, A.218, M.219, W.253, T.256, M.257
- Ligands: BCL.2, BCL.5, U10.14
15 PLIP interactions:12 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: B:I.50, B:A.97, B:A.121, B:F.122, B:F.122, B:F.122, B:Y.149, B:Y.149, B:L.239, B:V.242, B:V.242, C:A.214, C:L.215, C:A.218
- Hydrogen bonds: B:E.105
BPH.13: 21 residues within 4Å:- Chain B: F.182, A.185, L.186, A.189, L.190, L.220
- Chain C: G.64, L.65, A.126, V.127, W.130, T.134, T.147, A.150, F.151, A.154, A.274, V.275, T.278
- Ligands: BCL.6, BCL.7
10 PLIP interactions:7 interactions with chain C, 3 interactions with chain B- Hydrophobic interactions: C:L.65, C:A.150, C:F.151, C:F.151, C:A.154, C:T.278, B:F.182, B:A.185, B:A.189
- pi-Stacking: C:F.151
- 2 x U10: UBIQUINONE-10(Non-covalent)
U10.4: 12 residues within 4Å:- Chain B: L.190, H.191, L.194, E.213, D.214, F.217, Y.223, S.224, I.225, G.226, T.227, I.230
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:L.190, B:L.194, B:F.217, B:Y.223, B:I.225, B:I.230, B:I.230
- Hydrogen bonds: B:I.225, B:G.226
U10.14: 22 residues within 4Å:- Chain B: G.36, T.39, W.101, R.104
- Chain C: L.215, M.219, H.220, T.223, A.249, A.250, W.253, M.257, F.259, N.260, A.261, T.262, M.263, I.266, W.269, M.273
- Ligands: LDA.1, BPH.3
12 PLIP interactions:10 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:L.215, C:M.219, C:W.253, C:F.259, C:A.261, C:I.266, C:I.266, C:W.269, C:W.269, B:T.39, B:W.101
- Hydrogen bonds: C:A.261
- 1 x FE: FE (III) ION(Non-covalent)
- 1 x SPO: SPHEROIDENE(Non-covalent)
SPO.15: 22 residues within 4Å:- Chain C: F.68, F.69, I.71, G.72, W.76, F.106, W.116, S.120, F.121, M.123, W.158, M.159, L.161, G.162, F.163, W.172, V.176, Y.178, G.179, I.180, H.183
- Ligands: BCL.6
16 PLIP interactions:16 interactions with chain C- Hydrophobic interactions: C:F.68, C:F.69, C:I.71, C:F.106, C:W.116, C:F.121, C:W.158, C:L.161, C:F.163, C:F.163, C:W.172, C:V.176, C:V.176, C:Y.178, C:Y.178, C:I.180
- 1 x CDL: CARDIOLIPIN(Non-covalent)
CDL.16: 13 residues within 4Å:- Chain A: A.16, S.19, Y.30
- Chain B: N.200, P.201, K.203
- Chain C: G.144, K.145, H.146, W.149, R.268, W.272, L.279
16 PLIP interactions:13 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: C:W.149, C:W.149, C:W.149, C:W.272, C:L.279, C:L.279, A:Y.30, A:Y.30
- Hydrogen bonds: C:K.145
- Water bridges: C:K.145, C:R.268, A:Y.30
- Salt bridges: C:H.146, C:H.146, C:H.146, C:R.268
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Weaver, J.B. et al., Photosynthetic reaction center variants made via genetic code expansion show Tyr at M210 tunes the initial electron transfer mechanism. Proc.Natl.Acad.Sci.USA (2021)
- Release Date
- 2021-12-29
- Peptides
- Reaction center protein H chain: A
Reaction center protein L chain: B
Reaction center protein M chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
HB
LC
M - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 5 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
- 2 x U10: UBIQUINONE-10(Non-covalent)
- 1 x FE: FE (III) ION(Non-covalent)
- 1 x SPO: SPHEROIDENE(Non-covalent)
- 1 x CDL: CARDIOLIPIN(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Weaver, J.B. et al., Photosynthetic reaction center variants made via genetic code expansion show Tyr at M210 tunes the initial electron transfer mechanism. Proc.Natl.Acad.Sci.USA (2021)
- Release Date
- 2021-12-29
- Peptides
- Reaction center protein H chain: A
Reaction center protein L chain: B
Reaction center protein M chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
HB
LC
M - Membrane
-
We predict this structure to be a membrane protein.