SMTL ID : 7mxc.1

PRMT5:MEP50 complexed with adenosine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

hetero-4-4-mer

Ligands

4 x ADN: ADENOSINE(Non-covalent)

ADN.1: 15 residues within 4Å: Chain A: P.314, L.315, Y.324, G.365, G.367, E.392, K.393, S.418, D.419, M.420, R.421, E.435, L.436, E.444, C.449 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Y.324, A:Y.324, A:G.367, A:K.393, A:K.393, A:D.419, A:M.420, A:R.421, A:E.444 Water bridges: A:N.394 pi-Cation interactions: A:K.393 ADN.2: 15 residues within 4Å: Chain C: P.314, L.315, Y.324, G.365, G.367, E.392, K.393, S.418, D.419, M.420, R.421, E.435, L.436, E.444, C.449 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:Y.324, C:Y.324, C:G.367, C:K.393, C:K.393, C:D.419, C:M.420, C:R.421, C:E.444 Water bridges: C:N.394 pi-Cation interactions: C:K.393 ADN.3: 15 residues within 4Å: Chain E: P.314, L.315, Y.324, G.365, G.367, E.392, K.393, S.418, D.419, M.420, R.421, E.435, L.436, E.444, C.449 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:Y.324, E:G.367, E:K.393, E:K.393, E:D.419, E:M.420, E:R.421, E:E.444 Water bridges: E:N.394 pi-Cation interactions: E:K.393 ADN.4: 15 residues within 4Å: Chain G: P.314, L.315, Y.324, G.365, G.367, E.392, K.393, S.418, D.419, M.420, R.421, E.435, L.436, E.444, C.449 10 PLIP interactions: 10 interactions with chain G Hydrogen bonds: G:Y.324, G:G.367, G:K.393, G:K.393, G:D.419, G:M.420, G:R.421, G:E.444 Water bridges: G:N.394 pi-Cation interactions: G:K.393

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jensen-Pergakes, K. et al., SAM-Competitive PRMT5 Inhibitor PF-06939999 Demonstrates Antitumor Activity in Splicing Dysregulated NSCLC with Decreased Liability of Drug Resistance. Mol.Cancer Ther. (2022)

Release Date

2021-11-17

Peptides

Protein arginine N-methyltransferase 5: ACEG
Methylosome protein 50: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

B
B

D
B

F
B

H
B

Protein arginine N-methyltransferase 5

Methylosome protein 50

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