SMTL ID : 7n42.1

Crystal structure of the tandem bromodomain of human TAF1 (TAF1-T) bound to ZS1-681

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: E.196, D.200 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.200 EDO.2: 6 residues within 4Å: Chain A: M.150, V.152, D.154, S.155, W.156, H.159 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.154, A:W.156 Water bridges: A:D.154 EDO.3: 5 residues within 4Å: Chain A: R.27, H.36, L.57, Q.58, R.61 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.61 EDO.4: 4 residues within 4Å: Chain A: R.53, P.177, D.179, T.182 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.179, A:T.182 Water bridges: A:R.53 EDO.5: 6 residues within 4Å: Chain A: R.27, L.29, N.31, T.32, Y.33, H.36 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.31, A:N.31, A:Y.33 EDO.6: 5 residues within 4Å: Chain A: V.43, V.44, K.45, D.46, Y.89 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.43, A:K.45 Water bridges: A:Y.89 EDO.7: 3 residues within 4Å: Chain A: F.166, V.167 Ligands: 06M.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.166

1 x 06M: 6-(but-3-en-1-yl)-4-[6-{1-[(R)-S-methanesulfonimidoyl]cyclopropyl}-2-(1H-pyrrolo[2,3-b]pyridin-4-yl)pyrimidin-4-yl]-1,6-dihydro-7H-pyrrolo[2,3-c]pyridin-7-one(Non-covalent)

06M.8: 15 residues within 4Å: Chain A: W.156, P.157, F.158, H.160, P.161, V.162, N.163, F.166, Y.170, M.178, D.179, Y.212, N.213, Y.219 Ligands: EDO.7 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.156, A:P.157, A:F.158, A:V.162, A:F.166, A:D.179 Hydrogen bonds: A:N.163, A:N.213, A:N.213 pi-Stacking: A:W.156, A:Y.219

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.9: 4 residues within 4Å: Chain A: P.34, F.35, V.39, N.90 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, M.R. et al., Crystal structure of the tandem bromodomain of human TAF1 (TAF1-T) bound to ZS1-681. To Be Published

Release Date

2021-06-09

Peptides

Transcription initiation factor TFIID subunit 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transcription initiation factor TFIID subunit 1

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