- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.33 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x MN: MANGANESE (II) ION(Non-covalent)
- 32 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 4 residues within 4Å:- Chain A: G.72, S.73, R.76, K.114
Ligand excluded by PLIPSO4.4: 2 residues within 4Å:- Chain A: E.166, R.169
Ligand excluded by PLIPSO4.5: 6 residues within 4Å:- Chain A: I.50, E.51, T.52, N.53, K.54, S.195
Ligand excluded by PLIPSO4.8: 6 residues within 4Å:- Chain A: E.78, R.83, V.91
- Chain D: T.174, R.175, T.178
Ligand excluded by PLIPSO4.11: 4 residues within 4Å:- Chain B: G.72, S.73, R.76, K.114
Ligand excluded by PLIPSO4.12: 2 residues within 4Å:- Chain B: E.166, R.169
Ligand excluded by PLIPSO4.13: 6 residues within 4Å:- Chain B: I.50, E.51, T.52, N.53, K.54, S.195
Ligand excluded by PLIPSO4.16: 6 residues within 4Å:- Chain B: E.78, R.83, V.91
- Chain C: T.174, R.175, T.178
Ligand excluded by PLIPSO4.19: 4 residues within 4Å:- Chain C: G.72, S.73, R.76, K.114
Ligand excluded by PLIPSO4.20: 2 residues within 4Å:- Chain C: E.166, R.169
Ligand excluded by PLIPSO4.21: 6 residues within 4Å:- Chain C: I.50, E.51, T.52, N.53, K.54, S.195
Ligand excluded by PLIPSO4.24: 6 residues within 4Å:- Chain A: T.174, R.175, T.178
- Chain C: E.78, R.83, V.91
Ligand excluded by PLIPSO4.27: 4 residues within 4Å:- Chain D: G.72, S.73, R.76, K.114
Ligand excluded by PLIPSO4.28: 2 residues within 4Å:- Chain D: E.166, R.169
Ligand excluded by PLIPSO4.29: 6 residues within 4Å:- Chain D: I.50, E.51, T.52, N.53, K.54, S.195
Ligand excluded by PLIPSO4.32: 6 residues within 4Å:- Chain B: T.174, R.175, T.178
- Chain D: E.78, R.83, V.91
Ligand excluded by PLIPSO4.35: 4 residues within 4Å:- Chain E: G.72, S.73, R.76, K.114
Ligand excluded by PLIPSO4.36: 2 residues within 4Å:- Chain E: E.166, R.169
Ligand excluded by PLIPSO4.37: 6 residues within 4Å:- Chain E: I.50, E.51, T.52, N.53, K.54, S.195
Ligand excluded by PLIPSO4.40: 6 residues within 4Å:- Chain E: E.78, R.83, V.91
- Chain H: T.174, R.175, T.178
Ligand excluded by PLIPSO4.43: 4 residues within 4Å:- Chain F: G.72, S.73, R.76, K.114
Ligand excluded by PLIPSO4.44: 2 residues within 4Å:- Chain F: E.166, R.169
Ligand excluded by PLIPSO4.45: 6 residues within 4Å:- Chain F: I.50, E.51, T.52, N.53, K.54, S.195
Ligand excluded by PLIPSO4.48: 6 residues within 4Å:- Chain F: E.78, R.83, V.91
- Chain G: T.174, R.175, T.178
Ligand excluded by PLIPSO4.51: 4 residues within 4Å:- Chain G: G.72, S.73, R.76, K.114
Ligand excluded by PLIPSO4.52: 2 residues within 4Å:- Chain G: E.166, R.169
Ligand excluded by PLIPSO4.53: 6 residues within 4Å:- Chain G: I.50, E.51, T.52, N.53, K.54, S.195
Ligand excluded by PLIPSO4.56: 6 residues within 4Å:- Chain E: T.174, R.175, T.178
- Chain G: E.78, R.83, V.91
Ligand excluded by PLIPSO4.59: 4 residues within 4Å:- Chain H: G.72, S.73, R.76, K.114
Ligand excluded by PLIPSO4.60: 2 residues within 4Å:- Chain H: E.166, R.169
Ligand excluded by PLIPSO4.61: 6 residues within 4Å:- Chain H: I.50, E.51, T.52, N.53, K.54, S.195
Ligand excluded by PLIPSO4.64: 6 residues within 4Å:- Chain F: T.174, R.175, T.178
- Chain H: E.78, R.83, V.91
Ligand excluded by PLIP- 8 x QQ4: Hexa Vinylpyrrolidone K15(Non-covalent)
QQ4.6: 5 residues within 4Å:- Chain A: M.32, F.66, I.79, E.81, R.83
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.66, A:F.66, A:R.83
QQ4.14: 5 residues within 4Å:- Chain B: M.32, F.66, I.79, E.81, R.83
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:F.66, B:F.66, B:R.83
QQ4.22: 5 residues within 4Å:- Chain C: M.32, F.66, I.79, E.81, R.83
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:F.66, C:F.66, C:R.83
QQ4.30: 5 residues within 4Å:- Chain D: M.32, F.66, I.79, E.81, R.83
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:F.66, D:F.66, D:R.83
QQ4.38: 5 residues within 4Å:- Chain E: M.32, F.66, I.79, E.81, R.83
3 PLIP interactions:3 interactions with chain E- Hydrophobic interactions: E:F.66, E:F.66, E:R.83
QQ4.46: 5 residues within 4Å:- Chain F: M.32, F.66, I.79, E.81, R.83
3 PLIP interactions:3 interactions with chain F- Hydrophobic interactions: F:F.66, F:F.66, F:R.83
QQ4.54: 5 residues within 4Å:- Chain G: M.32, F.66, I.79, E.81, R.83
3 PLIP interactions:3 interactions with chain G- Hydrophobic interactions: G:F.66, G:F.66, G:R.83
QQ4.62: 5 residues within 4Å:- Chain H: M.32, F.66, I.79, E.81, R.83
3 PLIP interactions:3 interactions with chain H- Hydrophobic interactions: H:F.66, H:F.66, H:R.83
- 8 x 09Y: 5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-2-(2-methylphenyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide(Non-covalent)
09Y.7: 10 residues within 4Å:- Chain A: Y.44, K.54, H.61, E.81, D.109, E.120, I.121, Y.131
- Ligands: MN.1, MN.2
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Y.44, A:Y.44, A:K.54
- Water bridges: A:V.123
09Y.15: 10 residues within 4Å:- Chain B: Y.44, K.54, H.61, E.81, D.109, E.120, I.121, Y.131
- Ligands: MN.9, MN.10
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:Y.44, B:Y.44, B:K.54
- Water bridges: B:V.123
09Y.23: 10 residues within 4Å:- Chain C: Y.44, K.54, H.61, E.81, D.109, E.120, I.121, Y.131
- Ligands: MN.17, MN.18
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:Y.44, C:Y.44, C:K.54
- Water bridges: C:V.123
09Y.31: 10 residues within 4Å:- Chain D: Y.44, K.54, H.61, E.81, D.109, E.120, I.121, Y.131
- Ligands: MN.25, MN.26
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:Y.44, D:Y.44, D:K.54
- Hydrogen bonds: D:I.121
- Water bridges: D:V.123
09Y.39: 10 residues within 4Å:- Chain E: Y.44, K.54, H.61, E.81, D.109, E.120, I.121, Y.131
- Ligands: MN.33, MN.34
5 PLIP interactions:5 interactions with chain E- Hydrophobic interactions: E:Y.44, E:Y.44, E:K.54
- Hydrogen bonds: E:Y.131
- Water bridges: E:V.123
09Y.47: 10 residues within 4Å:- Chain F: Y.44, K.54, H.61, E.81, D.109, E.120, I.121, Y.131
- Ligands: MN.41, MN.42
5 PLIP interactions:5 interactions with chain F- Hydrophobic interactions: F:Y.44, F:Y.44, F:K.54
- Hydrogen bonds: F:Y.131
- Water bridges: F:V.123
09Y.55: 10 residues within 4Å:- Chain G: Y.44, K.54, H.61, E.81, D.109, E.120, I.121, Y.131
- Ligands: MN.49, MN.50
5 PLIP interactions:5 interactions with chain G- Hydrophobic interactions: G:Y.44, G:Y.44, G:K.54
- Hydrogen bonds: G:Y.131
- Water bridges: G:V.123
09Y.63: 10 residues within 4Å:- Chain H: Y.44, K.54, H.61, E.81, D.109, E.120, I.121, Y.131
- Ligands: MN.57, MN.58
6 PLIP interactions:6 interactions with chain H- Hydrophobic interactions: H:Y.44, H:Y.44, H:K.54
- Hydrogen bonds: H:I.121, H:Y.131
- Water bridges: H:V.123
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Slavish, P.J. et al., Chemical scaffold recycling: Structure-guided conversion of an HIV integrase inhibitor into a potent influenza virus RNA-dependent RNA polymerase inhibitor designed to minimize resistance potential. Eur.J.Med.Chem. (2023)
- Release Date
- 2022-06-08
- Peptides
- Polymerase acidic protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.33 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x MN: MANGANESE (II) ION(Non-covalent)
- 32 x SO4: SULFATE ION(Non-functional Binders)
- 8 x QQ4: Hexa Vinylpyrrolidone K15(Non-covalent)
- 8 x 09Y: 5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-2-(2-methylphenyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Slavish, P.J. et al., Chemical scaffold recycling: Structure-guided conversion of an HIV integrase inhibitor into a potent influenza virus RNA-dependent RNA polymerase inhibitor designed to minimize resistance potential. Eur.J.Med.Chem. (2023)
- Release Date
- 2022-06-08
- Peptides
- Polymerase acidic protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A