SMTL ID : 7n6f.1

Co-complex CYP46A1 with compound 3f

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 27 residues within 4Å: Chain A: K.84, Y.89, L.105, V.106, W.114, R.118, F.125, F.279, A.282, G.283, T.286, S.287, H.290, P.346, A.347, T.350, P.409, F.410, S.411, R.415, S.416, C.417, I.418, G.419, F.422, A.423 Ligands: 0I1.2 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:L.105, A:V.106, A:F.125, A:F.279, A:A.282, A:H.290, A:F.410, A:I.418, A:F.422 Water bridges: A:K.84, A:K.84, A:T.350, A:S.411 Salt bridges: A:K.84, A:K.84, A:R.118, A:R.415 Metal complexes: A:C.417

1 x 0I1: (3-fluoroazetidin-1-yl){1-[4-(4-fluorophenyl)pyrimidin-5-yl]piperidin-4-yl}methanone(Non-covalent)

0I1.2: 20 residues within 4Å: Chain A: F.60, M.88, Y.89, L.92, F.101, V.106, L.199, I.202, R.206, I.281, A.282, E.285, T.286, W.348, G.349, T.350, F.351, A.454, T.455 Ligands: HEM.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.101, A:V.106, A:I.281, A:E.285, A:T.455 Hydrogen bonds: A:R.206, A:R.206

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: S.72, K.75, F.76, L.359, I.360, D.361 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.361, A:D.361 Water bridges: A:G.362 EDO.4: 6 residues within 4Å: Chain A: N.83, K.84, C.109, Y.111, H.414, R.415 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.84, A:K.84, A:H.414, A:R.415 EDO.5: 4 residues within 4Å: Chain A: K.338, F.396, P.403, Y.407 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.338, A:K.338 Water bridges: A:P.403 EDO.6: 4 residues within 4Å: Chain A: V.443, P.444, G.445, Q.446 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.445, A:Q.446

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 4 residues within 4Å: Chain A: R.221, R.224, E.225, R.228 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.221, A:E.225, A:R.228, A:R.228 Water bridges: A:E.98, A:E.98, A:R.221 GOL.8: 5 residues within 4Å: Chain A: T.80, K.81, N.83, Y.111, E.355 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.80, A:K.81, A:N.83 Water bridges: A:N.83 GOL.9: 7 residues within 4Å: Chain A: I.147, K.151, M.163, Y.166, M.183, L.184, G.186 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.151, A:K.151, A:L.184 GOL.10: 4 residues within 4Å: Chain A: P.403, R.404, F.405, L.412 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.403, A:F.405 Water bridges: A:T.406

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ikeda, S. et al., Design and synthesis of aryl-piperidine derivatives as potent and selective PET tracers for cholesterol 24-hydroxylase (CH24H). Eur.J.Med.Chem. (2022)

Release Date

2022-07-27

Peptides

Cholesterol 24-hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cholesterol 24-hydroxylase

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