SMTL ID : 7o1i.1

Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme alpha-E141A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-mer

Ligands

2 x COA: COENZYME A(Non-covalent)

COA.1: 17 residues within 4Å: Chain A: Q.18, C.92, M.127, Q.149, Q.175, R.210, T.213, L.218, L.221, A.224, F.225, G.254, G.255, S.257, S.258, I.260, L.361 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.224 Hydrogen bonds: A:Q.18, A:Q.149, A:Q.175, A:R.210, A:R.210, A:S.258 Water bridges: A:I.260 pi-Cation interactions: A:R.210, A:R.210 COA.14: 17 residues within 4Å: Chain C: Q.18, C.92, M.127, Q.149, Q.175, R.210, T.213, L.218, L.221, A.224, F.225, G.254, G.255, S.257, S.258, I.260, L.361 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:A.224 Hydrogen bonds: C:Q.18, C:Q.149, C:Q.175, C:R.210, C:R.210, C:S.258 Water bridges: C:I.260 pi-Cation interactions: C:R.210, C:R.210

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: G.131, G.132, G.135, L.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.132, A:G.135, A:L.136 GOL.8: 4 residues within 4Å: Chain B: P.598, G.725, D.726, R.727 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.725, B:D.726, B:R.727, B:R.727 GOL.15: 4 residues within 4Å: Chain C: G.131, G.132, G.135, L.136 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.132, C:G.135, C:L.136 GOL.21: 4 residues within 4Å: Chain D: P.598, G.725, D.726, R.727 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:G.725, D:D.726, D:R.727, D:R.727

20 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: S.163, R.164, N.249, V.251 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: R.173, K.177, D.345, E.346 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: N.380, R.402 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain A: P.193, R.195 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain A: R.195, L.201 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain B: P.275, G.309, Q.310, V.311 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain B: V.290, D.291 Chain C: H.24 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain A: H.243 Chain B: P.647, L.648 Ligand excluded by PLIP SO4.12: 1 residues within 4Å: Chain B: H.7 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain B: F.182, V.183, F.261, N.264, L.265 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain C: S.163, R.164, N.249, V.251 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain C: R.173, K.177, D.345, E.346 Ligand excluded by PLIP SO4.18: 2 residues within 4Å: Chain C: N.380, R.402 Ligand excluded by PLIP SO4.19: 2 residues within 4Å: Chain C: P.193, R.195 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain C: R.195, L.201 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain D: P.275, G.309, Q.310, V.311 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain A: H.24 Chain D: V.290, D.291 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain C: H.243 Chain D: P.647, L.648 Ligand excluded by PLIP SO4.25: 1 residues within 4Å: Chain D: H.7 Ligand excluded by PLIP SO4.26: 5 residues within 4Å: Chain D: F.182, V.183, F.261, N.264, L.265 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dalwani, S. et al., Substrate specificity and conformational flexibility properties of the Mycobacterium tuberculosis beta-oxidation trifunctional enzyme. J.Struct.Biol. (2021)

Release Date

2021-08-25

Peptides

Putative acyltransferase Rv0859: AC
3-hydroxyacyl-CoA dehydrogenase: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

C
D

B
A

D
A

Putative acyltransferase Rv0859

3-hydroxyacyl-CoA dehydrogenase

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