SMTL ID : 7o1j.1

Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme beta-C92A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

hetero-2-2-mer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: I.36, L.39, R.40, H.43, L.46, E.48, I.51, M.79, M.268 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.43 GOL.11: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.19 GOL.12: 7 residues within 4Å: Chain B: G.83, G.84, L.130, G.131, P.156, E.157, L.160 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.84, B:L.130, B:E.157 Water bridges: B:G.132, B:E.157 GOL.17: 9 residues within 4Å: Chain C: I.36, L.39, R.40, H.43, L.46, E.48, I.51, M.79, M.268 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.43 GOL.27: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.19 GOL.28: 7 residues within 4Å: Chain D: G.83, G.84, L.130, G.131, P.156, E.157, L.160 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:G.84, D:L.130 Water bridges: D:G.132, D:E.157

26 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: S.163, R.164, N.249, V.251 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: H.24 Chain D: Q.289, V.290, D.291 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: P.193, R.195 Ligands: SO4.9 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: R.195, L.201 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: N.380, R.382, R.402 Ligand excluded by PLIP SO4.7: 1 residues within 4Å: Chain A: R.382 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain A: R.173, K.177, D.345, E.346 Ligand excluded by PLIP SO4.9: 8 residues within 4Å: Chain A: E.38, R.42, A.188, K.189, V.191, V.192, P.193 Ligands: SO4.4 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain A: R.107 Chain C: W.110 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain B: P.275, G.309, Q.310, V.311 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain A: H.243 Chain B: P.647, L.648 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain B: G.725, D.726, R.727 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain B: P.245, G.246 Ligand excluded by PLIP SO4.18: 4 residues within 4Å: Chain C: S.163, R.164, N.249, V.251 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain B: Q.289, V.290, D.291 Chain C: H.24 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain C: P.193, R.195 Ligands: SO4.25 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain C: R.195, L.201 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain C: N.380, R.382, R.402 Ligand excluded by PLIP SO4.23: 1 residues within 4Å: Chain C: R.382 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain C: R.173, K.177, D.345, E.346 Ligand excluded by PLIP SO4.25: 8 residues within 4Å: Chain C: E.38, R.42, A.188, K.189, V.191, V.192, P.193 Ligands: SO4.20 Ligand excluded by PLIP SO4.26: 2 residues within 4Å: Chain A: W.110 Chain C: R.107 Ligand excluded by PLIP SO4.29: 4 residues within 4Å: Chain D: P.275, G.309, Q.310, V.311 Ligand excluded by PLIP SO4.30: 3 residues within 4Å: Chain C: H.243 Chain D: P.647, L.648 Ligand excluded by PLIP SO4.31: 3 residues within 4Å: Chain D: G.725, D.726, R.727 Ligand excluded by PLIP SO4.32: 2 residues within 4Å: Chain D: P.245, G.246 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dalwani, S. et al., Substrate specificity and conformational flexibility properties of the Mycobacterium tuberculosis beta-oxidation trifunctional enzyme. J.Struct.Biol. (2021)

Release Date

2021-08-25

Peptides

Putative acyltransferase Rv0859: AC
3-hydroxyacyl-CoA dehydrogenase: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

C
D

B
A

D
A

Putative acyltransferase Rv0859

3-hydroxyacyl-CoA dehydrogenase

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